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2DE7
Asym. Unit
Info
Asym.Unit (263 KB)
Biol.Unit 1 (257 KB)
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(1)
Title
:
THE SUBSTRATE-BOUND COMPLEX BETWEEN OXYGENASE AND FERREDOXIN IN CARBAZOLE 1,9A-DIOXYGENASE
Authors
:
Y. Ashikawa, H. Nojiri
Date
:
08 Feb 06 (Deposition) - 05 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Electron Transfer Complex, Rieske Non-Heme Iron Oxygenase System, Terminal Oxygenase, Rieske-Type Ferredoxin, Carbazole 1, 9A-Dioxygenase, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Ashikawa, Z. Fujimoto, H. Noguchi, H. Habe, T. Omori, H. Yamane, H. Nojiri
Electron Transfer Complex Formation Between Oxygenase And Ferredoxin Components In Rieske Nonheme Iron Oxygenase System
Structure V. 14 1779 2006
(for further references see the
PDB file header
)
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: 9H-CARBAZOLE (9CAa)
1b: 9H-CARBAZOLE (9CAb)
2a: FE (II) ION (FE2a)
2b: FE (II) ION (FE2b)
2c: FE (II) ION (FE2c)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3c: FE2/S2 (INORGANIC) CLUSTER (FESc)
3d: FE2/S2 (INORGANIC) CLUSTER (FESd)
3e: FE2/S2 (INORGANIC) CLUSTER (FESe)
3f: FE2/S2 (INORGANIC) CLUSTER (FESf)
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No.
Name
Count
Type
Full Name
1
9CA
2
Ligand/Ion
9H-CARBAZOLE
2
FE2
3
Ligand/Ion
FE (II) ION
3
FES
6
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:183 , HIS A:187 , ASP A:333 , HOH A:528
BINDING SITE FOR RESIDUE FE2 A 501
02
AC2
SOFTWARE
HIS B:183 , HIS B:187 , ASP B:333 , HOH B:2114
BINDING SITE FOR RESIDUE FE2 B 501
03
AC3
SOFTWARE
HIS C:183 , HIS C:187 , ASP C:333 , HOH C:2052
BINDING SITE FOR RESIDUE FE2 C 501
04
AC4
SOFTWARE
CYS A:69 , HIS A:71 , ARG A:72 , VAL A:74 , CYS A:90 , TYR A:92 , HIS A:93 , TRP A:95
BINDING SITE FOR RESIDUE FES A 401
05
AC5
SOFTWARE
CYS B:69 , HIS B:71 , ARG B:72 , CYS B:90 , TYR B:92 , HIS B:93 , TRP B:95
BINDING SITE FOR RESIDUE FES B 401
06
AC6
SOFTWARE
CYS C:69 , HIS C:71 , ARG C:72 , VAL C:74 , CYS C:90 , TYR C:92 , HIS C:93 , TRP C:95
BINDING SITE FOR RESIDUE FES C 401
07
AC7
SOFTWARE
CYS D:46 , HIS D:48 , GLY D:49 , CYS D:65 , HIS D:68 , GLY D:70
BINDING SITE FOR RESIDUE FES D 201
08
AC8
SOFTWARE
CYS E:46 , HIS E:48 , GLY E:49 , CYS E:65 , HIS E:68 , GLY E:70
BINDING SITE FOR RESIDUE FES E 201
09
AC9
SOFTWARE
CYS F:46 , HIS F:48 , GLY F:49 , CYS F:65 , HIS F:68 , GLY F:70
BINDING SITE FOR RESIDUE FES F 201
10
BC1
SOFTWARE
GLY B:178 , ASP B:180 , HIS B:183 , ILE B:184 , ILE B:262 , LEU B:270 , PHE B:275 , GLN B:282 , GLU B:284 , PHE B:329 , ASN B:330 , HOH B:2114
BINDING SITE FOR RESIDUE 9CA B 2001
11
BC2
SOFTWARE
GLY C:178 , HIS C:183 , ILE C:184 , ALA C:259 , ILE C:262 , LEU C:270 , PHE C:275 , GLN C:282 , PHE C:329 , ASN C:330 , HOH C:2052
BINDING SITE FOR RESIDUE 9CA C 2002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: RIESKE (D:6-102,E:6-102,F:6-102)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIESKE
PS51296
Rieske [2Fe-2S] iron-sulfur domain profile.
CARAC_PSERE
6-102
3
D:6-102
E:6-102
F:6-102
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2de7a1 (A:1-142)
1b: SCOP_d2de7b1 (B:1-142)
1c: SCOP_d2de7c1 (C:1-142)
2a: SCOP_d2de7a2 (A:143-384)
2b: SCOP_d2de7b2 (B:143-384)
2c: SCOP_d2de7c2 (C:143-384)
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Protein Domains
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Class
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All beta proteins
(24004)
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
Ring hydroxylating alpha subunit ISP domain
(40)
Protein domain
:
Terminal oxygenase component of carbazole CarAa
(4)
Janthinobacterium sp. J3 [TaxId: 213804]
(4)
1a
d2de7a1
A:1-142
1b
d2de7b1
B:1-142
1c
d2de7c1
C:1-142
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
Bet v1-like
(158)
Family
:
Ring hydroxylating alpha subunit catalytic domain
(42)
Protein domain
:
Terminal oxygenase component of carbazole CarAa
(4)
Janthinobacterium sp. J3 [TaxId: 213804]
(4)
2a
d2de7a2
A:143-384
2b
d2de7b2
B:143-384
2c
d2de7c2
C:143-384
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (263 KB)
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