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Asym. Unit
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Asym.Unit (89 KB)
Biol.Unit 1 (85 KB)
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(1)
Title
:
UNIQUE BEHAVIOR OF A HISTIDINE RESPONSIBLE FOR AN ENGINEERED GREEN-TO-RED PHOTOCONVERSION PROCESS
Authors
:
H. Shimizu, H. Tsutsui, N. Nukina, A. Miyawaki
Date
:
27 Jan 06 (Deposition) - 07 Mar 06 (Release) - 02 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Photoconversion, Green State, Luminescent Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Tsutsui, H. Shimizu, H. Mizuno, N. Nukina, T. Furuta, A. Miyawaki
The E1 Mechanism In Photo-Induced Beta-Elimination Reaction For Green-To-Red Conversion Of Fluorescent Proteins
Chem. Biol. V. 16 1140 2009
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETH... (CR8a)
1b: 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETH... (CR8b)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
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No.
Name
Count
Type
Full Name
1
CR8
2
Mod. Amino Acid
2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1-(CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
NA
2
Ligand/Ion
SODIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:207 , HOH A:1348 , HOH A:1367 , HOH A:1406 , HOH A:1476 , HOH A:1553
BINDING SITE FOR RESIDUE MG A 1300
2
AC2
SOFTWARE
VAL A:76 , ASP A:190 , HOH A:1573
BINDING SITE FOR RESIDUE NA A 1301
3
AC3
SOFTWARE
TYR B:207 , HOH B:2344 , HOH B:2355 , HOH B:2393 , HOH B:2480 , HOH B:2527
BINDING SITE FOR RESIDUE MG B 2300
4
AC4
SOFTWARE
VAL B:76 , ASP B:190
BINDING SITE FOR RESIDUE NA B 2301
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
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1a: SCOP_d2ddda_ (A:)
1b: SCOP_d2dddb_ (B:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
automated matches
(66)
Protein domain
:
automated matches
(66)
Favia favus [TaxId: 102203]
(3)
1a
d2ddda_
A:
1b
d2dddb_
B:
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CATH Domains
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Asymmetric Unit 1
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