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2DC8
Asym. Unit
Info
Asym.Unit (49 KB)
Biol.Unit 1 (45 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE ANALYSIS OF BOVINE SPLEEN CATHEPSIN B-CA059 COMPLEX
Authors
:
D. Watanabe
Date
:
31 Dec 05 (Deposition) - 24 Jan 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.94
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cathepsin B, Cysteine Protease, Ca059, Hydrolase, Ec 3. 4. 22. 1
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Watanabe, A. Yamamoto, K. Matsumoto, M. Murata, K. Kitamura, K. Tomoo, T. Ishida
Quantitative Estimation Of Each Active Subsite Of Cathepsin B For The Inhibitory Activity, Based On The Inhibitory Activitybinding Mode Relationship Of A Series Of Epoxysuccinyl Inhibitors By X-Ray Crystal Structure Analyse Of The Complexes
To Be Published
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: N-{[(2S,3S)-3-(ETHOXYCARBONYL)OXIR... (59Aa)
2a: GLYCEROL (GOLa)
3a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
59A
1
Ligand/Ion
N-{[(2S,3S)-3-(ETHOXYCARBONYL)OXIRAN-2-YL]CARBONYL}-L-ISOLEUCINE
2
GOL
1
Ligand/Ion
GLYCEROL
3
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:2 , GLN A:10 , SER A:129 , TYR A:165 , HOH A:858 , HOH A:883
BINDING SITE FOR RESIDUE PO4 A 801
2
AC2
SOFTWARE
GLN A:23 , GLY A:27 , SER A:28 , CYS A:29 , TRP A:30 , GLY A:73 , GLY A:74 , GLY A:198 , HIS A:199 , TRP A:221 , HOH A:923 , HOH A:995
BINDING SITE FOR RESIDUE 59A A 590
3
AC3
SOFTWARE
ARG A:8 , ASP A:227 , ASN A:228 , PHE A:230 , LYS A:232 , HOH A:990
BINDING SITE FOR RESIDUE GOL A 500
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: THIOL_PROTEASE_CYS (A:23-34)
2: THIOL_PROTEASE_HIS (A:197-207)
3: THIOL_PROTEASE_ASN (A:214-233)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CATB_BOVIN
102-113
1
A:23-34
2
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
CATB_BOVIN
276-286
1
A:197-207
3
THIOL_PROTEASE_ASN
PS00640
Eukaryotic thiol (cysteine) proteases asparagine active site.
CATB_BOVIN
293-312
1
A:214-233
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Exons
(7, 7)
Info
All Exons
Exon 1.4 (A:1-30)
Exon 1.5 (A:31-70 (gaps))
Exon 1.6 (A:70-99)
Exon 1.7 (A:99-147)
Exon 1.8 (A:147-186)
Exon 1.9 (A:186-229)
Exon 1.10b (A:229-253)
View:
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10b
8: Boundary 1.10b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENSBTAT00000036795
2b
ENSBTAE00000134363
chr8:
7457578-7457703
126
CATB_BOVIN
1-42
42
0
-
-
1.3
ENSBTAT00000036795
3
ENSBTAE00000134364
chr8:
7458358-7458443
86
CATB_BOVIN
43-71
29
0
-
-
1.4
ENSBTAT00000036795
4
ENSBTAE00000134365
chr8:
7459328-7459442
115
CATB_BOVIN
71-109
39
1
A:1-30
30
1.5
ENSBTAT00000036795
5
ENSBTAE00000134366
chr8:
7461238-7461356
119
CATB_BOVIN
110-149
40
1
A:31-70 (gaps)
40
1.6
ENSBTAT00000036795
6
ENSBTAE00000134368
chr8:
7462142-7462227
86
CATB_BOVIN
149-178
30
1
A:70-99
30
1.7
ENSBTAT00000036795
7
ENSBTAE00000134369
chr8:
7462523-7462666
144
CATB_BOVIN
178-226
49
1
A:99-147
49
1.8
ENSBTAT00000036795
8
ENSBTAE00000134370
chr8:
7463058-7463174
117
CATB_BOVIN
226-265
40
1
A:147-186
40
1.9
ENSBTAT00000036795
9
ENSBTAE00000134371
chr8:
7464281-7464409
129
CATB_BOVIN
265-308
44
1
A:186-229
44
1.10b
ENSBTAT00000036795
10b
ENSBTAE00000287995
chr8:
7465007-7466062
1056
CATB_BOVIN
308-335
28
1
A:229-253
25
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2dc8a_ (A:)
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(
)
(
)
Folds
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)
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Papain-like
(200)
Protein domain
:
automated matches
(30)
Cow (Bos taurus) [TaxId: 9913]
(8)
1a
d2dc8a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2dc8A00 (A:1-253)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Cattle (Bos taurus)
(11)
1a
2dc8A00
A:1-253
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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