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2DBD
Asym. Unit
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Asym.Unit (554 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE CARD DOMAIN IN HUMAN CASPASE RECRUITMENT DOMAIN PROTEIN 4 (NOD1 PROTEIN)
Authors
:
K. Saito, M. Inoue, S. Koshiba, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
15 Dec 05 (Deposition) - 19 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Apoptosis, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Saito, M. Inoue, S. Koshiba, T. Kigawa, S. Yokoyama
Solution Structure Of The Card Domain In Human Caspase Recruitment Domain Protein 4 (Nod1 Protein)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
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1: CARD (A:8-83)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARD
PS50209
CARD caspase recruitment domain profile.
NOD1_HUMAN
15-92
1
A:8-83
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Exons
(3, 3)
Info
All Exons
Exon 1.7c (A:1-58 (gaps))
Exon 1.8 (A:59-105 (gaps))
Exon 1.9b (A:105-107 (gaps))
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All Exon Boundaries
1: Boundary 1.6/1.7c
2: Boundary 1.7c/1.8
3: Boundary 1.8/1.9b
4: Boundary 1.9b/1.10
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000222823
1b
ENSE00001882692
chr7:
30518396-30518222
175
NOD1_HUMAN
-
0
0
-
-
1.5
ENST00000222823
5
ENSE00001124263
chr7:
30499657-30499517
141
NOD1_HUMAN
-
0
0
-
-
1.6
ENST00000222823
6
ENSE00001017072
chr7:
30498856-30498768
89
NOD1_HUMAN
-
0
0
-
-
1.7c
ENST00000222823
7c
ENSE00001017079
chr7:
30496658-30496337
322
NOD1_HUMAN
1-67
67
1
A:1-58 (gaps)
63
1.8
ENST00000222823
8
ENSE00000674781
chr7:
30494927-30494753
175
NOD1_HUMAN
68-126
59
1
A:59-105 (gaps)
59
1.9b
ENST00000222823
9b
ENSE00001329693
chr7:
30492656-30490832
1825
NOD1_HUMAN
126-734
609
1
A:105-107 (gaps)
13
1.10
ENST00000222823
10
ENSE00000674737
chr7:
30487997-30487914
84
NOD1_HUMAN
734-762
29
0
-
-
1.11d
ENST00000222823
11d
ENSE00000674725
chr7:
30486666-30486583
84
NOD1_HUMAN
762-790
29
0
-
-
1.11e
ENST00000222823
11e
ENSE00001727512
chr7:
30485840-30485757
84
NOD1_HUMAN
790-818
29
0
-
-
1.12
ENST00000222823
12
ENSE00001758006
chr7:
30477272-30477189
84
NOD1_HUMAN
818-846
29
0
-
-
1.13
ENST00000222823
13
ENSE00001701889
chr7:
30475697-30475614
84
NOD1_HUMAN
846-874
29
0
-
-
1.14b
ENST00000222823
14b
ENSE00001712420
chr7:
30472795-30472712
84
NOD1_HUMAN
874-902
29
0
-
-
1.15
ENST00000222823
15
ENSE00001661700
chr7:
30469073-30468990
84
NOD1_HUMAN
902-930
29
0
-
-
1.17d
ENST00000222823
17d
ENSE00001929249
chr7:
30465326-30464143
1184
NOD1_HUMAN
930-953
24
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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