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2DAR
Asym. Unit
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Asym.Unit (445 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF FIRST LIM DOMAIN OF ENIGMA-LIKE PDZ AND LIM DOMAINS PROTEIN
Authors
:
T. N. Niraula, Y. Muto, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
14 Dec 05 (Deposition) - 12 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Lim Domain, Enigma Homolog Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. N. Niraula, Y. Muto, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of First Lim Domain Of Enigma-Like Pdz And Lim Domains Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:28 , CYS A:31 , HIS A:48 , GLU A:51
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:54 , CYS A:57 , CYS A:75 , CYS A:78
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_2 (A:86-90|A:26-84|-)
2: LIM_DOMAIN_1 (A:86-90|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_2
PS50023
LIM domain profile.
PDLI5_HUMAN
477-536
418-476
537-596
2
A:86-90
A:26-84
-
2
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
PDLI5_HUMAN
479-512
538-573
1
A:86-90
-
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Exons
(3, 3)
Info
All Exons
Exon 1.21b (A:1-4)
Exon 1.22 (A:5-36 (gaps))
Exon 1.23 (A:36-90 (gaps))
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All Exon Boundaries
1: Boundary 1.16/1.21b
2: Boundary 1.21b/1.22
3: Boundary 1.22/1.23
4: Boundary 1.23/1.25
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000317968
1c
ENSE00001912006
chr4:
95373053-95373146
94
PDLI5_HUMAN
-
0
0
-
-
1.2b
ENST00000317968
2b
ENSE00002170638
chr4:
95376398-95376535
138
PDLI5_HUMAN
1-32
32
0
-
-
1.6a
ENST00000317968
6a
ENSE00001175751
chr4:
95444875-95445026
152
PDLI5_HUMAN
33-83
51
0
-
-
1.8a
ENST00000317968
8a
ENSE00001238156
chr4:
95494502-95494544
43
PDLI5_HUMAN
83-97
15
0
-
-
1.9b
ENST00000317968
9b
ENSE00001071717
chr4:
95496767-95497185
419
PDLI5_HUMAN
98-237
140
0
-
-
1.15a
ENST00000317968
15a
ENSE00001003998
chr4:
95506716-95506888
173
PDLI5_HUMAN
237-295
59
0
-
-
1.16
ENST00000317968
16
ENSE00001003997
chr4:
95507559-95507595
37
PDLI5_HUMAN
295-307
13
0
-
-
1.21b
ENST00000317968
21b
ENSE00001003996
chr4:
95539155-95539342
188
PDLI5_HUMAN
307-370
64
1
A:1-4
4
1.22
ENST00000317968
22
ENSE00001137857
chr4:
95561427-95561601
175
PDLI5_HUMAN
370-428
59
1
A:5-36 (gaps)
57
1.23
ENST00000317968
23
ENSE00001137849
chr4:
95575611-95575791
181
PDLI5_HUMAN
428-488
61
1
A:36-90 (gaps)
61
1.25
ENST00000317968
25
ENSE00001137840
chr4:
95578578-95578698
121
PDLI5_HUMAN
489-529
41
0
-
-
1.26
ENST00000317968
26
ENSE00001137833
chr4:
95583573-95583688
116
PDLI5_HUMAN
529-567
39
0
-
-
1.27d
ENST00000317968
27d
ENSE00001948294
chr4:
95585129-95589374
4246
PDLI5_HUMAN
568-596
29
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2dara1 (A:53-84)
1b: SCOP_d2dara2 (A:8-52)
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(
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Organisms
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(
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Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
LIM domain
(37)
Protein domain
:
PDZ and LIM domain protein 5, Enigma
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2dara1
A:53-84
1b
d2dara2
A:8-52
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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