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2DAG
Asym. Unit
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Asym.Unit (337 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE FIRST UBA DOMAIN IN THE HUMAN UBIQUITIN SPECIFIC PROTEASE 5 (ISOPEPTIDASE 5)
Authors
:
C. Zhao, T. Kigawa, T. Tomizawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
14 Dec 05 (Deposition) - 14 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Isopeptidase T, Ubiquitin Specific Protease 5 (Usp 5), Uba Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
C. Zhao, T. Kigawa, T. Tomizawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The First Uba Domain In The Human Ubiquitin Specific Protease 5 (Isopeptidase 5)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: UBA (A:8-48|A:71-74)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBA
PS50030
Ubiquitin-associated domain (UBA) profile.
UBP5_HUMAN
654-695
722-762
2
A:8-48
A:71-74
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Exons
(3, 3)
Info
All Exons
Exon 1.15b (A:1-7)
Exon 1.16 (A:8-53)
Exon 1.17 (A:53-74 (gaps))
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All Exon Boundaries
1: Boundary 1.14/1.15b
2: Boundary 1.15b/1.16
3: Boundary 1.16/1.17
4: Boundary 1.17/1.18
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000229268
1a
ENSE00001603691
chr12:
6961285-6961454
170
UBP5_HUMAN
1-37
37
0
-
-
1.2
ENST00000229268
2
ENSE00000716138
chr12:
6964565-6964690
126
UBP5_HUMAN
38-79
42
0
-
-
1.3
ENST00000229268
3
ENSE00000716140
chr12:
6964919-6964985
67
UBP5_HUMAN
80-102
23
0
-
-
1.4
ENST00000229268
4
ENSE00000716141
chr12:
6965181-6965314
134
UBP5_HUMAN
102-146
45
0
-
-
1.5
ENST00000229268
5
ENSE00000716142
chr12:
6965469-6965614
146
UBP5_HUMAN
147-195
49
0
-
-
1.6
ENST00000229268
6
ENSE00000716143
chr12:
6965871-6966055
185
UBP5_HUMAN
195-257
63
0
-
-
1.7
ENST00000229268
7
ENSE00000716144
chr12:
6966793-6966887
95
UBP5_HUMAN
257-288
32
0
-
-
1.8
ENST00000229268
8
ENSE00000716145
chr12:
6967588-6967781
194
UBP5_HUMAN
289-353
65
0
-
-
1.9
ENST00000229268
9
ENSE00000866969
chr12:
6968634-6968705
72
UBP5_HUMAN
353-377
25
0
-
-
1.10
ENST00000229268
10
ENSE00000716147
chr12:
6969315-6969402
88
UBP5_HUMAN
377-406
30
0
-
-
1.11
ENST00000229268
11
ENSE00000716148
chr12:
6969530-6969655
126
UBP5_HUMAN
407-448
42
0
-
-
1.12
ENST00000229268
12
ENSE00000716149
chr12:
6970117-6970270
154
UBP5_HUMAN
449-500
52
0
-
-
1.13
ENST00000229268
13
ENSE00000716150
chr12:
6970607-6970781
175
UBP5_HUMAN
500-558
59
0
-
-
1.14
ENST00000229268
14
ENSE00000716151
chr12:
6971634-6971722
89
UBP5_HUMAN
558-588
31
0
-
-
1.15b
ENST00000229268
15b
ENSE00000866970
chr12:
6972350-6972541
192
UBP5_HUMAN
588-652
65
1
A:1-7
7
1.16
ENST00000229268
16
ENSE00000716153
chr12:
6972994-6973137
144
UBP5_HUMAN
652-700
49
1
A:8-53
46
1.17
ENST00000229268
17
ENSE00000716154
chr12:
6973214-6973359
146
UBP5_HUMAN
700-748
49
1
A:53-74 (gaps)
36
1.18
ENST00000229268
18
ENSE00000716155
chr12:
6973886-6974039
154
UBP5_HUMAN
749-800
52
0
-
-
1.19
ENST00000229268
19
ENSE00000716156
chr12:
6974328-6974412
85
UBP5_HUMAN
800-828
29
0
-
-
1.20
ENST00000229268
20
ENSE00001164806
chr12:
6975148-6975793
646
UBP5_HUMAN
828-858
31
0
-
-
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d2daga_ (A:)
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All alpha proteins
(14657)
Fold
:
RuvA C-terminal domain-like
(106)
Superfamily
:
UBA-like
(64)
Family
:
automated matches
(4)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2daga_
A:
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Asymmetric Unit 1
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