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2D9N
Asym. Unit
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Asym.Unit (394 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF CCCH TYPE ZINC-FINGER DOMAIN 2 IN CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR
Authors
:
C. Abe, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
12 Dec 05 (Deposition) - 12 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Ccch Zinc-Finger, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Abe, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of Ccch Type Zinc-Finger Domain 2 In Cleavage And Polyadenylation Specificity Factor
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:68 , CYS A:76 , CYS A:82 , HIS A:86
BINDING SITE FOR RESIDUE ZN A 256
2
AC2
SOFTWARE
CYS A:96 , CYS A:105 , CYS A:110 , HIS A:114
BINDING SITE FOR RESIDUE ZN A 456
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ZF_C3H1 (A:62-89|-|A:90-117|A:128-130|A:118...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_C3H1
PS50103
Zinc finger C3H1-type profile.
CPSF4_HUMAN
62-89
35-59
90-117
143-169
118-142
4
A:62-89
-
A:90-117
A:128-130
A:118-126
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Exons
(4, 4)
Info
All Exons
Exon 1.4b (A:56-58)
Exon 1.6 (A:58-103 (gaps))
Exon 1.7a (A:103-127)
Exon 1.8a (A:128-132)
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All Exon Boundaries
1: Boundary 1.1d/1.4b
2: Boundary 1.4b/1.6
3: Boundary 1.6/1.7a
4: Boundary 1.7a/1.8a
5: Boundary 1.8a/1.9a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000292476
1d
ENSE00001842942
chr7:
99036696-99036808
113
CPSF4_HUMAN
1-35
35
0
-
-
1.4b
ENST00000292476
4b
ENSE00001631953
chr7:
99042412-99042462
51
CPSF4_HUMAN
35-52
18
1
A:56-58
3
1.6
ENST00000292476
6
ENSE00001605972
chr7:
99045744-99045896
153
CPSF4_HUMAN
52-103
52
1
A:58-103 (gaps)
52
1.7a
ENST00000292476
7a
ENSE00001766366
chr7:
99047899-99047994
96
CPSF4_HUMAN
103-135
33
1
A:103-127
25
1.8a
ENST00000292476
8a
ENSE00002178878
chr7:
99048325-99048418
94
CPSF4_HUMAN
135-166
32
1
A:128-132
5
1.9a
ENST00000292476
9a
ENSE00001805918
chr7:
99049991-99050063
73
CPSF4_HUMAN
166-190
25
0
-
-
1.11c
ENST00000292476
11c
ENSE00001055437
chr7:
99051589-99051759
171
CPSF4_HUMAN
191-247
57
0
-
-
1.12f
ENST00000292476
12f
ENSE00001055438
chr7:
99054055-99054994
940
CPSF4_HUMAN
248-269
22
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain A
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