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2D8Z
Asym. Unit
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Asym.Unit (343 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE THIRD LIM DOMAIN OF FOUR AND A HALF LIM DOMAINS PROTEIN 2 (FHL-2)
Authors
:
X. R. Qin, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
08 Dec 05 (Deposition) - 08 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Lim Domain, Skeletal Muscle Lim-Protein 3, Lim-Domain Protein Dral, Four And A Half Lim Domains Protein 2, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Signaling Protein, Structural Protein
(Keyword Search:
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Reference
:
X. R. Qin, F. Hayashi, S. Yokoyama
Solution Structure Of The Third Lim Domain Of Four And A Half Lim Domains Protein 2 (Fhl-2)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:8 , CYS A:11 , HIS A:28 , CYS A:31
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:34 , CYS A:37 , CYS A:55 , CYS A:58
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_067455 (K13M, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067455
K
167
M
FHL2_HUMAN
Polymorphism
1127588
A
K
13
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_1 (-|-|A:8-41|A:67-70)
2: LIM_DOMAIN_2 (-|-|A:67-70|A:8-64)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
FHL2_HUMAN
40-75
101-136
162-195
221-258
2
-
-
A:8-41
A:67-70
2
LIM_DOMAIN_2
PS50023
LIM domain profile.
FHL2_HUMAN
99-160
38-98
219-279
161-218
2
-
-
A:67-70
A:8-64
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Exons
(4, 4)
Info
All Exons
Exon 1.7 (A:1-1)
Exon 1.8 (A:1-13 (gaps))
Exon 1.9a (A:14-70 (gaps))
Exon 1.10e (A:70-70)
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All Exon Boundaries
1: Boundary 1.5c/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9a
4: Boundary 1.9a/1.10e
5: Boundary 1.10e/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2d
ENST00000393353
2d
ENSE00001515001
chr2:
106015508-106015299
210
FHL2_HUMAN
-
0
0
-
-
1.5c
ENST00000393353
5c
ENSE00001776995
chr2:
106002997-106002818
180
FHL2_HUMAN
1-52
52
0
-
-
1.7
ENST00000393353
7
ENSE00001785679
chr2:
105990190-105990016
175
FHL2_HUMAN
53-111
59
1
A:1-1
1
1.8
ENST00000393353
8
ENSE00001646620
chr2:
105984196-105984027
170
FHL2_HUMAN
111-167
57
1
A:1-13 (gaps)
57
1.9a
ENST00000393353
9a
ENSE00001788075
chr2:
105979928-105979742
187
FHL2_HUMAN
168-230
63
1
A:14-70 (gaps)
63
1.10e
ENST00000393353
10e
ENSE00001887479
chr2:
105977891-105977283
609
FHL2_HUMAN
230-279
50
1
A:70-70
1
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2d8za1 (A:8-32)
1b: SCOP_d2d8za2 (A:33-64)
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Organisms
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Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
LIM domain
(37)
Protein domain
:
Four and a half LIM domains protein 2, FHL2
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2d8za1
A:8-32
1b
d2d8za2
A:33-64
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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