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2D8Y
Asym. Unit
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Asym.Unit (463 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE LIM DOMAIN OF EPITHELIAL PROTEIN LOST IN NEOPLASM
Authors
:
X. R. Qin, T. Nagashima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
08 Dec 05 (Deposition) - 08 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Lim Domain, Epithelial Protein Lost In Neoplasm, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Protein
(Keyword Search:
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Reference
:
X. R. Qin, T. Nagashima, F. Hayashi, S. Yokoyama
Solution Structure Of The Lim Domain Of Epithelial Protein Lost In Neoplasm
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:18 , CYS A:21 , HIS A:39 , CYS A:42
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:45 , CYS A:48 , CYS A:66 , HIS A:69
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_2 (A:16-76)
2: LIM_DOMAIN_1 (A:18-52)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_2
PS50023
LIM domain profile.
LIMA1_HUMAN
388-448
1
A:16-76
2
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
LIMA1_HUMAN
390-424
1
A:18-52
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Exons
(3, 3)
Info
All Exons
Exon 1.10b (A:1-9)
Exon 1.11 (A:10-53)
Exon 1.12b (A:53-91 (gaps))
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All Exon Boundaries
1: Boundary 1.9/1.10b
2: Boundary 1.10b/1.11
3: Boundary 1.11/1.12b
4: Boundary 1.12b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000341247
1
ENSE00001114650
chr12:
50677353-50677203
151
LIMA1_HUMAN
-
0
0
-
-
1.2
ENST00000341247
2
ENSE00001379043
chr12:
50642557-50642416
142
LIMA1_HUMAN
1-40
40
0
-
-
1.3
ENST00000341247
3
ENSE00000837648
chr12:
50625493-50625448
46
LIMA1_HUMAN
40-55
16
0
-
-
1.5a
ENST00000341247
5a
ENSE00001060480
chr12:
50616268-50615804
465
LIMA1_HUMAN
56-210
155
0
-
-
1.6
ENST00000341247
6
ENSE00000424945
chr12:
50599851-50599767
85
LIMA1_HUMAN
211-239
29
0
-
-
1.7
ENST00000341247
7
ENSE00000742546
chr12:
50598483-50598335
149
LIMA1_HUMAN
239-288
50
0
-
-
1.8
ENST00000341247
8
ENSE00000742547
chr12:
50594667-50594560
108
LIMA1_HUMAN
289-324
36
0
-
-
1.9
ENST00000341247
9
ENSE00000742548
chr12:
50589670-50589613
58
LIMA1_HUMAN
325-344
20
0
-
-
1.10b
ENST00000341247
10b
ENSE00000919783
chr12:
50586344-50586235
110
LIMA1_HUMAN
344-380
37
1
A:1-9
9
1.11
ENST00000341247
11
ENSE00000919782
chr12:
50575820-50575687
134
LIMA1_HUMAN
381-425
45
1
A:10-53
44
1.12b
ENST00000341247
12b
ENSE00001666705
chr12:
50571852-50569565
2288
LIMA1_HUMAN
425-759
335
1
A:53-91 (gaps)
68
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2d8ya1 (A:9-43)
1b: SCOP_d2d8ya2 (A:44-85)
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Protein Domains
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Organisms
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Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
LIM domain
(37)
Protein domain
:
Eplin, LIMA1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2d8ya1
A:9-43
1b
d2d8ya2
A:44-85
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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