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Asym. Unit
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Asym.Unit (341 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE SECOND LIM DOMAIN OF PARTICULARLY INTERESTING NEW CYS-HIS PROTEIN (PINCH)
Authors
:
X. R. Qin, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
08 Dec 05 (Deposition) - 08 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Lim Domain; Pinch Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Protein, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. R. Qin, F. Hayashi, S. Yokoyama
Solution Structure Of The Second Lim Domain Of Particularly Interesting New Cys-His Protein (Pinch)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:8 , CYS A:11 , HIS A:28 , CYS A:31
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:34 , CYS A:37 , CYS A:55 , CYS A:58
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_2 (-|A:8-64|-|A:70-70|-)
2: LIM_DOMAIN_1 (-|A:8-41|A:70-70|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_2
PS50023
LIM domain profile.
LIMS1_HUMAN
8-69
71-128
191-250
133-190
251-310
2
-
A:8-64
-
A:70-70
-
2
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
LIMS1_HUMAN
10-45
71-104
135-168
193-226
2
-
A:8-41
A:70-70
-
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Exons
(5, 5)
Info
All Exons
Exon 1.8a (A:1-4)
Exon 1.12a (A:5-12)
Exon 1.14 (A:12-52)
Exon 1.15a (A:52-70 (gaps))
Exon 1.16b (A:70-70)
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All Exon Boundaries
1: Boundary 1.3/1.8a
2: Boundary 1.8a/1.12a
3: Boundary 1.12a/1.14
4: Boundary 1.14/1.15a
5: Boundary 1.15a/1.16b
6: Boundary 1.16b/1.17
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000393310
3
ENSE00001514785
chr2:
109204922-109205084
163
LIMS1_HUMAN
-
0
0
-
-
1.8a
ENST00000393310
8a
ENSE00002191959
chr2:
109276061-109276220
160
LIMS1_HUMAN
1-52
52
1
A:1-4
4
1.12a
ENST00000393310
12a
ENSE00001618857
chr2:
109287237-109287303
67
LIMS1_HUMAN
53-75
23
1
A:5-12
8
1.14
ENST00000393310
14
ENSE00001746358
chr2:
109288781-109288901
121
LIMS1_HUMAN
75-115
41
1
A:12-52
41
1.15a
ENST00000393310
15a
ENSE00002187125
chr2:
109289336-109289485
150
LIMS1_HUMAN
115-165
51
1
A:52-70 (gaps)
51
1.16b
ENST00000393310
16b
ENSE00001613279
chr2:
109292334-109292484
151
LIMS1_HUMAN
165-215
51
1
A:70-70
1
1.17
ENST00000393310
17
ENSE00001601331
chr2:
109293062-109293154
93
LIMS1_HUMAN
216-246
31
0
-
-
1.18
ENST00000393310
18
ENSE00001805893
chr2:
109294435-109294483
49
LIMS1_HUMAN
247-263
17
0
-
-
1.19
ENST00000393310
19
ENSE00001629219
chr2:
109297151-109297226
76
LIMS1_HUMAN
263-288
26
0
-
-
1.21c
ENST00000393310
21c
ENSE00001514784
chr2:
109300341-109303702
3362
LIMS1_HUMAN
288-325
38
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2d8xa1 (A:33-64)
1b: SCOP_d2d8xa2 (A:8-32)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
LIM domain
(37)
Protein domain
:
Pinch (particularly interesting new Cys-His) protein
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2d8xa1
A:33-64
1b
d2d8xa2
A:8-32
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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