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2D7C
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (41 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RAB11 IN COMPLEX WITH FIP3 RAB-BINDING DOMAIN
Authors
:
T. Shiba, H. Koga, H. W. Shin, M. Kawasaki, R. Kato, K. Nakayama, S. Wakatsuki
Date
:
16 Nov 05 (Deposition) - 26 Sep 06 (Release) - 21 Oct 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Gtp-Ase, Coiled-Coil, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Shiba, H. Koga, H. W. Shin, M. Kawasaki, R. Kato, K. Nakayama, S. Wakatsuki
Structural Basis For Rab11-Dependent Membrane Recruitment Of A Family Of Rab11-Interacting Protein 3 (Fip3)/Arfophilin-1.
Proc. Natl. Acad. Sci. Usa V. 103 15416 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
1b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
2
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
[
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]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:25 , THR A:43 , GTP A:1001 , HOH A:1031 , HOH A:1036
BINDING SITE FOR RESIDUE MG A 1002
2
AC2
SOFTWARE
SER B:25 , THR B:43 , GTP B:1101 , HOH B:1138 , HOH B:1139
BINDING SITE FOR RESIDUE MG B 1102
3
AC3
SOFTWARE
SER A:20 , GLY A:21 , VAL A:22 , GLY A:23 , LYS A:24 , SER A:25 , ASN A:26 , PHE A:36 , ASN A:37 , LEU A:38 , SER A:40 , SER A:42 , THR A:43 , ALA A:68 , GLY A:69 , ASN A:124 , LYS A:125 , ASP A:127 , LEU A:128 , SER A:154 , ALA A:155 , LEU A:156 , MG A:1002 , HOH A:1019 , HOH A:1021 , HOH A:1028 , HOH A:1029 , HOH A:1031 , HOH A:1036 , HOH A:1150
BINDING SITE FOR RESIDUE GTP A 1001
4
AC4
SOFTWARE
SER B:20 , GLY B:21 , VAL B:22 , GLY B:23 , LYS B:24 , SER B:25 , ASN B:26 , PHE B:36 , ASN B:37 , LEU B:38 , SER B:40 , SER B:42 , THR B:43 , ALA B:68 , GLY B:69 , LEU B:70 , ASN B:124 , LYS B:125 , ASP B:127 , LEU B:128 , SER B:154 , ALA B:155 , LEU B:156 , MG B:1102 , HOH B:1124 , HOH B:1125 , HOH B:1138 , HOH B:1139 , HOH B:1154 , HOH B:1155
BINDING SITE FOR RESIDUE GTP B 1101
5
AC5
SOFTWARE
GLU A:103 , LYS A:107 , ASN A:146 , ARG B:132 , ALA B:133 , VAL B:134 , PRO B:135 , THR B:136 , HOH B:1218
BINDING SITE FOR RESIDUE MES A 1
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RAB (A:7-173,B:7-173)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RAB
PS51419
small GTPase Rab1 family profile.
RB11A_HUMAN
7-213
2
A:7-173
B:7-173
[
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]
Exons
(7, 14)
Info
All Exons
Exon 1.1b (A:7-14 | B:7-14)
Exon 1.2b (A:14-79 | B:14-79)
Exon 1.3a (A:79-144 | B:79-144)
Exon 1.4 (A:144-171 | B:144-171)
Exon 1.5b (A:171-173 | B:171-173)
Exon 2.17 (C:715-719 | D:715-719)
Exon 2.18c (C:720-756 | D:720-756)
View:
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All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.2b
3: Boundary 1.2b/1.3a
4: Boundary 1.3a/1.4
5: Boundary 1.4/1.5b
6: Boundary 1.5b/-
7: Boundary 2.16/2.17
8: Boundary 2.17/2.18c
9: Boundary 2.18c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000261890
1b
ENSE00001320736
chr15:
66161796-66161963
168
RB11A_HUMAN
1-14
14
2
A:7-14
B:7-14
8
8
1.2b
ENST00000261890
2b
ENSE00001714502
chr15:
66169670-66169865
196
RB11A_HUMAN
14-79
66
2
A:14-79
B:14-79
66
66
1.3a
ENST00000261890
3a
ENSE00001134403
chr15:
66170100-66170293
194
RB11A_HUMAN
79-144
66
2
A:79-144
B:79-144
66
66
1.4
ENST00000261890
4
ENSE00000694763
chr15:
66172009-66172089
81
RB11A_HUMAN
144-171
28
2
A:144-171
B:144-171
28
28
1.5b
ENST00000261890
5b
ENSE00001958491
chr15:
66180039-66184329
4291
RB11A_HUMAN
171-216
46
2
A:171-173
B:171-173
3
3
2.1a
ENST00000262305
1a
ENSE00002171558
chr16:
475619-476720
1102
RFIP3_HUMAN
1-238
238
0
-
-
2.2
ENST00000262305
2
ENSE00001769445
chr16:
511404-511497
94
RFIP3_HUMAN
239-270
32
0
-
-
2.3
ENST00000262305
3
ENSE00001745300
chr16:
521295-521389
95
RFIP3_HUMAN
270-301
32
0
-
-
2.6a
ENST00000262305
6a
ENSE00001779971
chr16:
532525-532736
212
RFIP3_HUMAN
302-372
71
0
-
-
2.7a
ENST00000262305
7a
ENSE00000664307
chr16:
538851-539000
150
RFIP3_HUMAN
372-422
51
0
-
-
2.9a
ENST00000262305
9a
ENSE00001246797
chr16:
546824-546859
36
RFIP3_HUMAN
422-434
13
0
-
-
2.11c
ENST00000262305
11c
ENSE00001246789
chr16:
553004-553097
94
RFIP3_HUMAN
434-465
32
0
-
-
2.12b
ENST00000262305
12b
ENSE00001246781
chr16:
555524-555627
104
RFIP3_HUMAN
466-500
35
0
-
-
2.13c
ENST00000262305
13c
ENSE00001246776
chr16:
560660-560800
141
RFIP3_HUMAN
500-547
48
0
-
-
2.14b
ENST00000262305
14b
ENSE00001142679
chr16:
568943-569024
82
RFIP3_HUMAN
547-574
28
0
-
-
2.15b
ENST00000262305
15b
ENSE00000664290
chr16:
569754-569891
138
RFIP3_HUMAN
575-620
46
0
-
-
2.16
ENST00000262305
16
ENSE00000664289
chr16:
570122-570277
156
RFIP3_HUMAN
621-672
52
0
-
-
2.17
ENST00000262305
17
ENSE00001142674
chr16:
570459-570599
141
RFIP3_HUMAN
673-719
47
2
C:715-719
D:715-719
5
5
2.18c
ENST00000262305
18c
ENSE00001886439
chr16:
570726-573011
2286
RFIP3_HUMAN
720-756
37
2
C:720-756
D:720-756
37
37
[
close EXON info
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2d7ca_ (A:)
1b: SCOP_d2d7cb_ (B:)
2a: SCOP_d2d7cc1 (C:715-756)
2b: SCOP_d2d7cd_ (D:)
View:
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Classes
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Rab11a
(6)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2d7ca_
A:
1b
d2d7cb_
B:
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Eferin C-derminal domain-like
(4)
Family
:
Eferin C-derminal domain-like
(4)
Protein domain
:
Rab11 family-interacting protein 3 (Rab11-FIP3, Eferin)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d2d7cc1
C:715-756
2b
d2d7cd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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