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2D5G
Asym. Unit
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Asym.Unit (88 KB)
Biol.Unit 1 (16 KB)
Biol.Unit 2 (16 KB)
Biol.Unit 3 (16 KB)
Biol.Unit 4 (16 KB)
Biol.Unit 5 (15 KB)
Biol.Unit 6 (16 KB)
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(1)
Title
:
STRUCTURE OF UBIQUITIN FOLD PROTEIN R767E MUTANT
Authors
:
N. Shibata, Y. Higuchi
Date
:
01 Nov 05 (Deposition) - 01 Nov 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Ubiquitin Fold, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Shibata, T. Hanamura, R. Yamamoto, Y. Ueda, H. Yamamoto, A. Kikuchi, Y. Higuchi
Structure Of Ubiquitin Fold Protein R767E Mutant
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: MERCURY (II) ION (HGa)
1b: MERCURY (II) ION (HGb)
1c: MERCURY (II) ION (HGc)
1d: MERCURY (II) ION (HGd)
1e: MERCURY (II) ION (HGe)
1f: MERCURY (II) ION (HGf)
1g: MERCURY (II) ION (HGg)
1h: MERCURY (II) ION (HGh)
1i: MERCURY (II) ION (HGi)
1j: MERCURY (II) ION (HGj)
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No.
Name
Count
Type
Full Name
1
HG
10
Ligand/Ion
MERCURY (II) ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:750 , CYS C:803
BINDING SITE FOR RESIDUE HG A 601
02
AC2
SOFTWARE
PHE A:759 , CYS A:760 , TYR A:790
BINDING SITE FOR RESIDUE HG A 602
03
AC3
SOFTWARE
CYS B:750 , ASP B:751
BINDING SITE FOR RESIDUE HG B 603
04
AC4
SOFTWARE
PHE B:759 , CYS B:760 , TYR B:790
BINDING SITE FOR RESIDUE HG B 604
05
AC5
SOFTWARE
CYS C:750
BINDING SITE FOR RESIDUE HG C 605
06
AC6
SOFTWARE
PHE C:759 , CYS C:760
BINDING SITE FOR RESIDUE HG C 606
07
AC7
SOFTWARE
PHE D:759 , CYS D:760
BINDING SITE FOR RESIDUE HG D 607
08
AC8
SOFTWARE
PHE E:759 , CYS E:760
BINDING SITE FOR RESIDUE HG E 608
09
AC9
SOFTWARE
PHE F:759 , CYS F:760 , TYR F:790
BINDING SITE FOR RESIDUE HG F 609
10
BC1
SOFTWARE
CYS F:750 , CYS F:803
BINDING SITE FOR RESIDUE HG F 610
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: DIX (A:750-832,B:750-832,C:750-832,D:75...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DIX
PS50841
DIX domain profile.
AXIN1_RAT
745-827
5
A:750-832
B:750-832
C:750-832
D:750-832
F:750-832
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2d5ga1 (A:750-832)
1b: SCOP_d2d5gb1 (B:750-832)
1c: SCOP_d2d5gc1 (C:750-832)
1d: SCOP_d2d5gd1 (D:750-832)
1e: SCOP_d2d5ge1 (E:753-832)
1f: SCOP_d2d5gf1 (F:750-832)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
DIX domain
(2)
Protein domain
:
Axin 1
(2)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
1a
d2d5ga1
A:750-832
1b
d2d5gb1
B:750-832
1c
d2d5gc1
C:750-832
1d
d2d5gd1
D:750-832
1e
d2d5ge1
E:753-832
1f
d2d5gf1
F:750-832
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (88 KB)
Header - Asym.Unit
Biol.Unit 1 (16 KB)
Header - Biol.Unit 1
Biol.Unit 2 (16 KB)
Header - Biol.Unit 2
Biol.Unit 3 (16 KB)
Header - Biol.Unit 3
Biol.Unit 4 (16 KB)
Header - Biol.Unit 4
Biol.Unit 5 (15 KB)
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Biol.Unit 6 (16 KB)
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