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2D3N
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (94 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MALTOHEXAOSE-PRODUCING AMYLASE FROM BACILLUS SP.707 COMPLEXED WITH MALTOHEXAOSE
Authors
:
R. Kanai, K. Haga, T. Akiba, K. Yamane, K. Harata
Date
:
29 Sep 05 (Deposition) - 14 Mar 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein-Carbohydrate Complex, Ligand Binding, Maltohexaose, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Kanai, K. Haga, T. Akiba, K. Yamane, K. Harata
Role Of Trp140 At Subsite -6 On The Maltohexaose Production Of Maltohexaose-Producing Amylase From Alkalophilic Bacillu Sp. 707
Protein Sci. V. 15 468 2006
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(3, 25)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: ALPHA-D-GLUCOSE (GLCa)
2b: ALPHA-D-GLUCOSE (GLCb)
2c: ALPHA-D-GLUCOSE (GLCc)
2d: ALPHA-D-GLUCOSE (GLCd)
2e: ALPHA-D-GLUCOSE (GLCe)
2f: ALPHA-D-GLUCOSE (GLCf)
2g: ALPHA-D-GLUCOSE (GLCg)
2h: ALPHA-D-GLUCOSE (GLCh)
2i: ALPHA-D-GLUCOSE (GLCi)
2j: ALPHA-D-GLUCOSE (GLCj)
2k: ALPHA-D-GLUCOSE (GLCk)
2l: ALPHA-D-GLUCOSE (GLCl)
2m: ALPHA-D-GLUCOSE (GLCm)
2n: ALPHA-D-GLUCOSE (GLCn)
2o: ALPHA-D-GLUCOSE (GLCo)
2p: ALPHA-D-GLUCOSE (GLCp)
2q: ALPHA-D-GLUCOSE (GLCq)
2r: ALPHA-D-GLUCOSE (GLCr)
2s: ALPHA-D-GLUCOSE (GLCs)
2t: ALPHA-D-GLUCOSE (GLCt)
2u: ALPHA-D-GLUCOSE (GLCu)
3a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
GLC
21
Ligand/Ion
ALPHA-D-GLUCOSE
3
NA
1
Ligand/Ion
SODIUM ION
[
close Hetero Component info
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:51 , SER A:52 , LYS A:72 , GLC A:602
BINDING SITE FOR RESIDUE GLC A 601
02
AC2
SOFTWARE
LYS A:72 , GLY A:110 , ALA A:111 , TRP A:140 , GLC A:601 , GLC A:603
BINDING SITE FOR RESIDUE GLC A 602
03
AC3
SOFTWARE
GLY A:110 , ALA A:111 , TRP A:140 , TYR A:203 , GLC A:602 , GLC A:604 , GLC A:652 , GLC A:653 , HOH A:756 , HOH A:788
BINDING SITE FOR RESIDUE GLC A 603
04
AC4
SOFTWARE
ASP A:166 , MET A:202 , TYR A:203 , GLC A:603 , GLC A:605 , GLC A:651 , GLC A:652 , HOH A:788 , HOH A:976
BINDING SITE FOR RESIDUE GLC A 604
05
AC5
SOFTWARE
MET A:202 , TYR A:203 , GLC A:604 , GLC A:606 , GLC A:651 , GLC A:652 , HOH A:839 , HOH A:868 , HOH A:1090
BINDING SITE FOR RESIDUE GLC A 605
06
AC6
SOFTWARE
TRP A:15 , TYR A:58 , MET A:202 , ASP A:333 , GLC A:605 , HOH A:701 , HOH A:711 , HOH A:759 , HOH A:769 , HOH A:868 , HOH A:1129
BINDING SITE FOR RESIDUE GLC A 606
07
AC7
SOFTWARE
GLU A:194 , TYR A:198 , LYS A:239 , LEU A:340 , HOH A:1126
BINDING SITE FOR RESIDUE GLC A 608
08
AC8
SOFTWARE
GLU A:194 , ASN A:195 , TRP A:284 , GLC A:612
BINDING SITE FOR RESIDUE GLC A 611
09
AC9
SOFTWARE
ASN A:125 , TRP A:284 , HIS A:321 , SER A:323 , HIS A:324 , GLC A:611 , HOH A:1059
BINDING SITE FOR RESIDUE GLC A 612
10
BC1
SOFTWARE
HIS A:183 , GLU A:391 , GLC A:622 , HOH A:800 , HOH A:936 , HOH A:1002 , HOH A:1006 , HOH A:1045 , HOH A:1140
BINDING SITE FOR RESIDUE GLC A 621
11
BC2
SOFTWARE
TYR A:160 , HIS A:210 , GLU A:212 , GLC A:621 , HOH A:928 , HOH A:1106
BINDING SITE FOR RESIDUE GLC A 622
12
BC3
SOFTWARE
THR A:40 , GLN A:98 , TYR A:100 , TYR A:363 , GLC A:632
BINDING SITE FOR RESIDUE GLC A 631
13
BC4
SOFTWARE
GLY A:7 , PHE A:262 , SER A:323 , TYR A:363 , GLC A:631 , GLC A:633 , HOH A:746 , HOH A:964 , HOH A:1047
BINDING SITE FOR RESIDUE GLC A 632
14
BC5
SOFTWARE
PRO A:322 , GLU A:360 , GLN A:361 , GLY A:362 , TYR A:363 , GLC A:632
BINDING SITE FOR RESIDUE GLC A 633
15
BC6
SOFTWARE
GLC A:642 , HOH A:919
BINDING SITE FOR RESIDUE GLC A 641
16
BC7
SOFTWARE
GLY A:304 , ASP A:432 , GLY A:433 , ALA A:434 , GLY A:476 , GLY A:477 , GLC A:641 , GLC A:643 , HOH A:854
BINDING SITE FOR RESIDUE GLC A 642
17
BC8
SOFTWARE
ASN A:128 , GLY A:304 , TRP A:347 , GLC A:642 , HOH A:780
BINDING SITE FOR RESIDUE GLC A 643
18
BC9
SOFTWARE
ASP A:166 , ASN A:174 , ASN A:175 , GLC A:604 , GLC A:605 , GLC A:652 , HOH A:722 , HOH A:729 , HOH A:839 , HOH A:1010
BINDING SITE FOR RESIDUE GLC A 651
19
CC1
SOFTWARE
TRP A:167 , GLC A:603 , GLC A:604 , GLC A:605 , GLC A:651 , GLC A:653 , HOH A:1010
BINDING SITE FOR RESIDUE GLC A 652
20
CC2
SOFTWARE
TRP A:167 , GLC A:603 , GLC A:652 , GLC A:654 , HOH A:1005
BINDING SITE FOR RESIDUE GLC A 653
21
CC3
SOFTWARE
ARG A:172 , ASP A:308 , ARG A:310 , ASN A:311 , GLC A:653 , HOH A:885
BINDING SITE FOR RESIDUE GLC A 654
22
CC4
SOFTWARE
ASP A:163 , ALA A:186 , ASP A:188 , ASP A:207 , ASP A:209 , HOH A:771
BINDING SITE FOR RESIDUE CA A 501
23
CC5
SOFTWARE
ASN A:106 , ASP A:199 , ASP A:205 , HIS A:240 , HOH A:721
BINDING SITE FOR RESIDUE CA A 502
24
CC6
SOFTWARE
GLY A:305 , TYR A:307 , HIS A:408 , ASN A:409 , ASP A:432 , HOH A:804
BINDING SITE FOR RESIDUE CA A 503
25
CC7
SOFTWARE
ASP A:163 , ASP A:188 , ASP A:199 , ASP A:205 , ILE A:206
BINDING SITE FOR RESIDUE NA A 504
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2d3na1 (A:399-485)
2a: SCOP_d2d3na2 (A:5-398)
View:
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Classes
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Bacterial alpha-Amylase
(35)
Bacillus sp. 707 [TaxId: 1416]
(4)
1a
d2d3na1
A:399-485
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Bacterial alpha-amylase
(35)
Bacillus sp. 707 [TaxId: 1416]
(4)
2a
d2d3na2
A:5-398
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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