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2D33
Asym. Unit
Info
Asym.Unit (340 KB)
Biol.Unit 1 (330 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLCYSTEINE SYNTHETASE COMPLEXED WITH ALUMINUM FLUORIDE
Authors
:
T. Hibi, M. Nakayama, H. Nii, Y. Kurokawa, H. Katano, J. Oda
Date
:
25 Sep 05 (Deposition) - 14 Nov 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Glutathione Homeostasis, Peptide Synthesis, Phosphoryl Transfer, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Hibi, M. Nakayama, H. Nii, Y. Kurokawa, H. Katano, J. Oda
Structural Basis Of Efficient Coupling Between Peptide Ligation And Atp Hydrolysis By Gamma-Gluatamylcysteine Synthetase
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 29)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
2a: ALUMINUM FLUORIDE (AF3a)
2b: ALUMINUM FLUORIDE (AF3b)
2c: ALUMINUM FLUORIDE (AF3c)
2d: ALUMINUM FLUORIDE (AF3d)
3a: CYSTEINE (CYSa)
3b: CYSTEINE (CYSb)
3c: CYSTEINE (CYSc)
3d: CYSTEINE (CYSd)
4a: GLUTAMIC ACID (GLUa)
4b: GLUTAMIC ACID (GLUb)
4c: GLUTAMIC ACID (GLUc)
4d: GLUTAMIC ACID (GLUd)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
5e: MAGNESIUM ION (MGe)
5f: MAGNESIUM ION (MGf)
5g: MAGNESIUM ION (MGg)
5h: MAGNESIUM ION (MGh)
5i: MAGNESIUM ION (MGi)
5j: MAGNESIUM ION (MGj)
5k: MAGNESIUM ION (MGk)
5l: MAGNESIUM ION (MGl)
5m: MAGNESIUM ION (MGm)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
4
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
AF3
4
Ligand/Ion
ALUMINUM FLUORIDE
3
CYS
4
Mod. Amino Acid
CYSTEINE
4
GLU
4
Mod. Amino Acid
GLUTAMIC ACID
5
MG
13
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:29 , ASP A:60 , GLU A:67 , GLU A:519 , AF3 A:522 , MG A:525 , HOH A:700
BINDING SITE FOR RESIDUE MG A 523
02
AC2
SOFTWARE
GLU A:27 , HIS A:150 , GLU A:328 , ADP A:521 , AF3 A:522
BINDING SITE FOR RESIDUE MG A 524
03
AC3
SOFTWARE
GLU A:27 , GLU A:67 , ADP A:521 , AF3 A:522 , MG A:523 , HOH A:560
BINDING SITE FOR RESIDUE MG A 525
04
AC4
SOFTWARE
ASN A:442 , ASP A:444 , HOH A:586 , HOH A:601
BINDING SITE FOR RESIDUE MG A 526
05
AC5
SOFTWARE
GLU B:29 , ASP B:60 , GLU B:67 , GLU B:1519 , AF3 B:1522 , MG B:1525 , HOH B:1591
BINDING SITE FOR RESIDUE MG B 1523
06
AC6
SOFTWARE
GLU B:27 , HIS B:150 , GLU B:328 , ADP B:1521 , AF3 B:1522
BINDING SITE FOR RESIDUE MG B 1524
07
AC7
SOFTWARE
GLU B:27 , GLU B:67 , ADP B:1521 , AF3 B:1522 , MG B:1523 , HOH B:1589
BINDING SITE FOR RESIDUE MG B 1525
08
AC8
SOFTWARE
GLU C:29 , ASP C:60 , GLU C:67 , GLU C:2519 , AF3 C:2522 , MG C:2525 , HOH C:2552
BINDING SITE FOR RESIDUE MG C 2523
09
AC9
SOFTWARE
GLU C:27 , HIS C:150 , GLU C:328 , ADP C:2521 , AF3 C:2522
BINDING SITE FOR RESIDUE MG C 2524
10
BC1
SOFTWARE
GLU C:27 , GLU C:67 , ADP C:2521 , AF3 C:2522 , MG C:2523
BINDING SITE FOR RESIDUE MG C 2525
11
BC2
SOFTWARE
GLU D:29 , ASP D:60 , GLU D:67 , GLU D:3519 , AF3 D:3522 , HOH D:3593
BINDING SITE FOR RESIDUE MG D 3523
12
BC3
SOFTWARE
GLU D:27 , HIS D:150 , GLU D:328 , ADP D:3521 , AF3 D:3522
BINDING SITE FOR RESIDUE MG D 3524
13
BC4
SOFTWARE
GLU D:27 , GLU D:67 , ADP D:3521 , AF3 D:3522 , HOH D:3555
BINDING SITE FOR RESIDUE MG D 3525
14
BC5
SOFTWARE
GLU A:29 , ASP A:60 , ILE A:146 , SER A:147 , HIS A:150 , ARG A:235 , ARG A:330 , CYS A:520 , AF3 A:522 , MG A:523
BINDING SITE FOR RESIDUE GLU A 519
15
BC6
SOFTWARE
ASP A:60 , PHE A:61 , TYR A:131 , ASN A:297 , GLU A:519 , AF3 A:522
BINDING SITE FOR RESIDUE CYS A 520
16
BC7
SOFTWARE
GLN A:23 , GLY A:25 , LEU A:26 , GLU A:27 , GLU A:67 , ILE A:69 , THR A:70 , PRO A:71 , VAL A:72 , ASN A:152 , PHE A:153 , SER A:154 , LYS A:306 , GLU A:325 , TYR A:326 , GLU A:328 , AF3 A:522 , MG A:524 , MG A:525 , HOH A:546 , HOH A:560 , HOH A:629 , HOH A:666
BINDING SITE FOR RESIDUE ADP A 521
17
BC8
SOFTWARE
GLU A:27 , ASP A:60 , GLU A:67 , HIS A:150 , ARG A:330 , GLU A:519 , CYS A:520 , ADP A:521 , MG A:523 , MG A:524 , MG A:525 , HOH A:560
BINDING SITE FOR RESIDUE AF3 A 522
18
BC9
SOFTWARE
GLU B:29 , ASP B:60 , ILE B:146 , SER B:147 , GLY B:148 , HIS B:150 , ARG B:235 , TYR B:241 , ARG B:330 , CYS B:1520 , AF3 B:1522 , MG B:1523 , HOH B:1554 , HOH B:1582 , HOH B:1591
BINDING SITE FOR RESIDUE GLU B 1519
19
CC1
SOFTWARE
ASP B:60 , TYR B:131 , ARG B:132 , GLN B:144 , TYR B:241 , ASN B:297 , TYR B:300 , GLU B:1519
BINDING SITE FOR RESIDUE CYS B 1520
20
CC2
SOFTWARE
GLN B:23 , GLY B:25 , LEU B:26 , GLU B:27 , GLU B:67 , ILE B:69 , THR B:70 , PRO B:71 , VAL B:72 , ASN B:152 , PHE B:153 , SER B:154 , LYS B:306 , VAL B:308 , GLU B:325 , TYR B:326 , GLU B:328 , AF3 B:1522 , MG B:1524 , MG B:1525 , HOH B:1541 , HOH B:1570
BINDING SITE FOR RESIDUE ADP B 1521
21
CC3
SOFTWARE
GLU B:27 , ASP B:60 , GLU B:67 , HIS B:150 , GLU B:328 , ARG B:330 , GLU B:1519 , ADP B:1521 , MG B:1523 , MG B:1524 , MG B:1525 , HOH B:1589 , HOH B:1591
BINDING SITE FOR RESIDUE AF3 B 1522
22
CC4
SOFTWARE
GLU C:29 , ASP C:60 , ILE C:146 , SER C:147 , GLY C:148 , HIS C:150 , ARG C:235 , TYR C:241 , ARG C:330 , CYS C:2520 , AF3 C:2522 , MG C:2523 , HOH C:2552
BINDING SITE FOR RESIDUE GLU C 2519
23
CC5
SOFTWARE
ASP C:60 , TYR C:131 , ARG C:132 , LEU C:135 , TYR C:241 , ASN C:297 , TYR C:300 , GLU C:2519 , AF3 C:2522
BINDING SITE FOR RESIDUE CYS C 2520
24
CC6
SOFTWARE
GLN C:23 , GLY C:25 , LEU C:26 , GLU C:27 , GLU C:67 , ILE C:69 , THR C:70 , PRO C:71 , VAL C:72 , ASN C:152 , PHE C:153 , SER C:154 , LYS C:306 , GLU C:325 , TYR C:326 , GLU C:328 , AF3 C:2522 , MG C:2524 , MG C:2525 , HOH C:2528
BINDING SITE FOR RESIDUE ADP C 2521
25
CC7
SOFTWARE
GLU C:27 , ASP C:60 , GLU C:67 , HIS C:150 , ARG C:330 , GLU C:2519 , CYS C:2520 , ADP C:2521 , MG C:2523 , MG C:2524 , MG C:2525 , HOH C:2552
BINDING SITE FOR RESIDUE AF3 C 2522
26
CC8
SOFTWARE
GLU D:29 , ASP D:60 , ILE D:146 , SER D:147 , GLY D:148 , HIS D:150 , ARG D:235 , TYR D:241 , ARG D:330 , CYS D:3520 , AF3 D:3522 , MG D:3523 , HOH D:3593
BINDING SITE FOR RESIDUE GLU D 3519
27
CC9
SOFTWARE
ASP D:60 , TYR D:131 , TYR D:241 , ASN D:297 , TYR D:300 , GLU D:3519 , AF3 D:3522
BINDING SITE FOR RESIDUE CYS D 3520
28
DC1
SOFTWARE
GLN D:23 , GLY D:25 , LEU D:26 , GLU D:27 , GLU D:67 , ILE D:69 , THR D:70 , PRO D:71 , VAL D:72 , ASN D:152 , SER D:154 , LYS D:306 , VAL D:308 , GLU D:325 , TYR D:326 , GLU D:328 , AF3 D:3522 , MG D:3524 , MG D:3525 , HOH D:3527 , HOH D:3538 , HOH D:3555
BINDING SITE FOR RESIDUE ADP D 3521
29
DC2
SOFTWARE
GLU D:27 , ASP D:60 , GLU D:67 , HIS D:150 , GLU D:3519 , CYS D:3520 , ADP D:3521 , MG D:3523 , MG D:3524 , MG D:3525 , HOH D:3555 , HOH D:3593
BINDING SITE FOR RESIDUE AF3 D 3522
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2d33a_ (A:)
1b: SCOP_d2d33b_ (B:)
1c: SCOP_d2d33c_ (C:)
1d: SCOP_d2d33d_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
Glutamate-cysteine ligase
(4)
Protein domain
:
automated matches
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d2d33a_
A:
1b
d2d33b_
B:
1c
d2d33c_
C:
1d
d2d33d_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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