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2D2Q
Asym. Unit
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Asym.Unit (106 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DIMERIZED RADIXIN FERM DOMAIN
Authors
:
K. Kitano, F. Yusa, T. Hakoshima
Date
:
15 Sep 05 (Deposition) - 18 Apr 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Homo Dimer, Masking, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kitano, F. Yusa, T. Hakoshima
Structure Of Dimerized Radixin Ferm Domain Suggests A Novel Masking Motif In C-Terminal Residues 295-304
Acta Crystallogr. , Sect. F V. 62 340 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: FERM_3 (A:5-295,B:5-295)
2: FERM_1 (A:58-88,B:58-88)
3: FERM_2 (A:176-205,B:176-205)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERM_3
PS50057
FERM domain profile.
RADI_MOUSE
5-295
2
A:5-295
B:5-295
2
FERM_1
PS00660
FERM domain signature 1.
RADI_MOUSE
58-88
2
A:58-88
B:58-88
3
FERM_2
PS00661
FERM domain signature 2.
RADI_MOUSE
176-205
2
A:176-205
B:176-205
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2d2qa1 (A:88-198)
1b: SCOP_d2d2qb1 (B:88-198)
2a: SCOP_d2d2qa2 (A:199-299)
2b: SCOP_d2d2qb2 (B:199-304)
3a: SCOP_d2d2qa3 (A:3-87)
3b: SCOP_d2d2qb3 (B:3-87)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Acyl-CoA binding protein-like
(48)
Superfamily
:
Second domain of FERM
(33)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d2d2qa1
A:88-198
1b
d2d2qb1
B:88-198
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
automated matches
(50)
Protein domain
:
automated matches
(50)
Mouse (Mus musculus) [TaxId: 10090]
(2)
2a
d2d2qa2
A:199-299
2b
d2d2qb2
B:199-304
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
automated matches
(55)
Protein domain
:
automated matches
(55)
Mouse (Mus musculus) [TaxId: 10090]
(3)
3a
d2d2qa3
A:3-87
3b
d2d2qb3
B:3-87
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2d2qA01 (A:4-82)
1b: CATH_2d2qB01 (B:4-82)
2a: CATH_2d2qA02 (A:83-199)
2b: CATH_2d2qB02 (B:83-199)
3a: CATH_2d2qA03 (A:201-291)
3b: CATH_2d2qB03 (B:201-291)
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Homologous Superfamilies
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Organisms
(
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
House mouse (Mus musculus)
(21)
1a
2d2qA01
A:4-82
1b
2d2qB01
B:4-82
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Acyl-CoA Binding Protein
(47)
Homologous Superfamily
:
[code=1.20.80.10, no name defined]
(37)
House mouse (Mus musculus)
(9)
2a
2d2qA02
A:83-199
2b
2d2qB02
B:83-199
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
House mouse (Mus musculus)
(39)
3a
2d2qA03
A:201-291
3b
2d2qB03
B:201-291
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Pfam Domains
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Asym.Unit (106 KB)
Header - Asym.Unit
Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
Biol.Unit 2 (53 KB)
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