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2D1K
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (111 KB)
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(1)
Title
:
TERNARY COMPLEX OF THE WH2 DOMAIN OF MIM WITH ACTIN-DNASE I
Authors
:
D. Chereau, F. Kerff, R. Dominguez
Date
:
26 Aug 05 (Deposition) - 12 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Wasp, Wip, Wh2, Actin, Dnase I, Structural Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. H. Lee, F. Kerff, D. Chereau, F. Ferron, A. Klug, R. Dominguez
Structural Basis For The Actin-Binding Function Of Missing-In-Metastasis
Structure V. 15 145 2007
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Hetero Components
(6, 8)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: BETA-D-MANNOSE (BMAa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
4a: 4-METHYL-HISTIDINE (HICa)
5a: MAGNESIUM ION (MGa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CA
2
Ligand/Ion
CALCIUM ION
4
HIC
1
Mod. Amino Acid
4-METHYL-HISTIDINE
5
MG
1
Ligand/Ion
MAGNESIUM ION
6
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:18 , LEU B:21 , ALA B:248 , NAG B:271
BINDING SITE FOR RESIDUE NAG B 270
2
AC2
SOFTWARE
MET B:245 , NAG B:270 , BMA B:272
BINDING SITE FOR RESIDUE NAG B 271
3
AC3
SOFTWARE
NAG B:271 , HOH B:1331
BINDING SITE FOR RESIDUE BMA B 272
4
AC4
SOFTWARE
ATP A:1380 , HOH A:1385 , HOH A:1386
BINDING SITE FOR RESIDUE CA A 1381
5
AC5
SOFTWARE
ASP B:201 , THR B:203 , THR B:205 , THR B:207 , HOH B:1277 , HOH B:1281
BINDING SITE FOR RESIDUE CA B 1273
6
AC6
SOFTWARE
ASP B:172 , ASP B:198 , SER B:199 , HOH B:1276 , HOH B:1289
BINDING SITE FOR RESIDUE MG B 1274
7
AC7
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:74 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , LYS A:213 , GLU A:214 , GLY A:302 , THR A:303 , TYR A:306 , LYS A:336 , CA A:1381 , HOH A:1385 , HOH A:1386
BINDING SITE FOR RESIDUE ATP A 1380
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_DNAS1_BOVIN_001 (H121P, chain B, )
2: VAR_054011 (T725A, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DNAS1_BOVIN_001
*
H
143
P
DNAS1_BOVIN
---
---
B
H
121
P
2
UniProt
VAR_054011
T
725
A
MTSS1_HUMAN
Polymorphism
3829037
C
T
725
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(6, 6)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63)
2: ACTINS_ACT_LIKE (A:104-116)
3: DNASE_I_1 (B:130-150)
4: DNASE_I_2 (B:167-174)
5: ACTINS_2 (A:356-364)
6: WH2 (C:727-744)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
1
A:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
1
A:104-116
3
DNASE_I_1
PS00919
Deoxyribonuclease I signature 1.
DNAS1_BOVIN
152-172
1
B:130-150
4
DNASE_I_2
PS00918
Deoxyribonuclease I signature 2.
DNAS1_BOVIN
189-196
1
B:167-174
5
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
1
A:356-364
6
WH2
PS51082
WH2 domain profile.
MTSS1_HUMAN
727-744
1
C:727-744
[
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]
Exons
(8, 8)
Info
All Exons
Exon 1.2 (B:1-27)
Exon 1.3 (B:28-57)
Exon 1.4 (B:57-85)
Exon 1.5 (B:85-124)
Exon 1.6 (B:124-161)
Exon 1.7 (B:162-213)
Exon 1.8 (B:213-245)
Exon 1.9 (B:246-260)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000026784
1
ENSBTAE00000293181
chr25:
3564711-3564829
119
DNAS1_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000026784
2
ENSBTAE00000218065
chr25:
3565156-3565303
148
DNAS1_BOVIN
1-49
49
1
B:1-27
27
1.3
ENSBTAT00000026784
3
ENSBTAE00000420413
chr25:
3565639-3565727
89
DNAS1_BOVIN
50-79
30
1
B:28-57
30
1.4
ENSBTAT00000026784
4
ENSBTAE00000410212
chr25:
3565904-3565987
84
DNAS1_BOVIN
79-107
29
1
B:57-85
29
1.5
ENSBTAT00000026784
5
ENSBTAE00000218074
chr25:
3566232-3566347
116
DNAS1_BOVIN
107-146
40
1
B:85-124
40
1.6
ENSBTAT00000026784
6
ENSBTAE00000407443
chr25:
3566499-3566611
113
DNAS1_BOVIN
146-183
38
1
B:124-161
38
1.7
ENSBTAT00000026784
7
ENSBTAE00000398022
chr25:
3566701-3566855
155
DNAS1_BOVIN
184-235
52
1
B:162-213
52
1.8
ENSBTAT00000026784
8
ENSBTAE00000425804
chr25:
3567129-3567225
97
DNAS1_BOVIN
235-267
33
1
B:213-245
33
1.9
ENSBTAT00000026784
9
ENSBTAE00000293180
chr25:
3567369-3567733
365
DNAS1_BOVIN
268-282
15
1
B:246-260
15
[
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]
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d2d1kb_ (B:)
2a: SCOP_d2d1ka1 (A:4-146)
2b: SCOP_d2d1ka2 (A:147-374)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNase I-like
(70)
Superfamily
:
DNase I-like
(70)
Family
:
DNase I-like
(31)
Protein domain
:
Deoxyribonuclease I
(11)
Cow (Bos taurus) [TaxId: 9913]
(11)
1a
d2d1kb_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
2a
d2d1ka1
A:4-146
2b
d2d1ka2
A:147-374
[
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CATH Domains
(4, 5)
Info
all CATH domains
1a: CATH_2d1kA01 (A:6-34,A:71-134,A:337-373)
1b: CATH_2d1kA03 (A:136-181,A:271-332)
2a: CATH_2d1kB00 (B:1-260)
3a: CATH_2d1kA04 (A:182-267)
4a: CATH_2d1kA02 (A:35-68)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Rabbit (Oryctolagus cuniculus)
(44)
1a
2d1kA01
A:6-34,A:71-134,A:337-373
1b
2d1kA03
A:136-181,A:271-332
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Deoxyribonuclease I; Chain A
(35)
Homologous Superfamily
:
[code=3.60.10.10, no name defined]
(35)
Rabbit (Oryctolagus cuniculus)
(7)
2a
2d1kB00
B:1-260
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Rabbit (Oryctolagus cuniculus)
(44)
3a
2d1kA04
A:182-267
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Actin; Chain A, domain 2
(36)
Homologous Superfamily
:
Actin; Chain A, domain 2
(36)
Rabbit (Oryctolagus cuniculus)
(17)
4a
2d1kA02
A:35-68
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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