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2D11
Asym. Unit
Info
Asym.Unit (216 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (56 KB)
Biol.Unit 3 (56 KB)
Biol.Unit 4 (56 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE RADIXIN FERM DOMAIN COMPLEXED WITH THE NHERF-2 C-TERMINAL TAIL PEPTIDE
Authors
:
S. Terawaki, R. Maesaki, T. Hakoshima
Date
:
11 Aug 05 (Deposition) - 18 Jul 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.81
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Keywords
:
Protein-Peptide Complex, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Terawaki, R. Maesaki, T. Hakoshima
Structural Basis For Nherf Recognition By Erm Proteins
Structure V. 14 777 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: FERM_3 (A:5-295,B:5-295,C:5-295,D:5-295)
2: FERM_1 (A:58-88,B:58-88,C:58-88,D:58-88)
3: FERM_2 (A:176-205,B:176-205,C:176-205,D:17...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERM_3
PS50057
FERM domain profile.
RADI_MOUSE
5-295
4
A:5-295
B:5-295
C:5-295
D:5-295
2
FERM_1
PS00660
FERM domain signature 1.
RADI_MOUSE
58-88
4
A:58-88
B:58-88
C:58-88
D:58-88
3
FERM_2
PS00661
FERM domain signature 2.
RADI_MOUSE
176-205
4
A:176-205
B:176-205
C:176-205
D:176-205
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d2d11a1 (A:88-198)
1b: SCOP_d2d11d1 (D:88-198)
1c: SCOP_d2d11b1 (B:88-198)
1d: SCOP_d2d11c1 (C:88-198)
2a: SCOP_d2d11a2 (A:199-296)
2b: SCOP_d2d11d2 (D:199-296)
2c: SCOP_d2d11b2 (B:199-296)
2d: SCOP_d2d11c2 (C:199-296)
3a: SCOP_d2d11a3 (A:3-87)
3b: SCOP_d2d11d3 (D:3-87)
3c: SCOP_d2d11b3 (B:3-87)
3d: SCOP_d2d11c3 (C:3-87)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Acyl-CoA binding protein-like
(48)
Superfamily
:
Second domain of FERM
(33)
Family
:
Second domain of FERM
(26)
Protein domain
:
Radixin
(9)
Mouse (Mus musculus) [TaxId: 10090]
(9)
1a
d2d11a1
A:88-198
1b
d2d11d1
D:88-198
1c
d2d11b1
B:88-198
1d
d2d11c1
C:88-198
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Third domain of FERM
(26)
Protein domain
:
Radixin
(9)
Mouse (Mus musculus) [TaxId: 10090]
(9)
2a
d2d11a2
A:199-296
2b
d2d11d2
D:199-296
2c
d2d11b2
B:199-296
2d
d2d11c2
C:199-296
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
First domain of FERM
(18)
Protein domain
:
Radixin
(9)
Mouse (Mus musculus) [TaxId: 10090]
(9)
3a
d2d11a3
A:3-87
3b
d2d11d3
D:3-87
3c
d2d11b3
B:3-87
3d
d2d11c3
C:3-87
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_2d11A01 (A:4-82)
1b: CATH_2d11B01 (B:4-82)
1c: CATH_2d11C01 (C:4-82)
1d: CATH_2d11D01 (D:4-82)
2a: CATH_2d11A02 (A:83-199)
2b: CATH_2d11B02 (B:83-199)
2c: CATH_2d11C02 (C:83-199)
2d: CATH_2d11D02 (D:83-199)
3a: CATH_2d11A03 (A:201-291)
3b: CATH_2d11B03 (B:201-291)
3c: CATH_2d11C03 (C:201-291)
3d: CATH_2d11D03 (D:201-291)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
House mouse (Mus musculus)
(21)
1a
2d11A01
A:4-82
1b
2d11B01
B:4-82
1c
2d11C01
C:4-82
1d
2d11D01
D:4-82
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Acyl-CoA Binding Protein
(47)
Homologous Superfamily
:
[code=1.20.80.10, no name defined]
(37)
House mouse (Mus musculus)
(9)
2a
2d11A02
A:83-199
2b
2d11B02
B:83-199
2c
2d11C02
C:83-199
2d
2d11D02
D:83-199
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
House mouse (Mus musculus)
(39)
3a
2d11A03
A:201-291
3b
2d11B03
B:201-291
3c
2d11C03
C:201-291
3d
2d11D03
D:201-291
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Pfam Domains
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Asym.Unit (216 KB)
Header - Asym.Unit
Biol.Unit 1 (56 KB)
Header - Biol.Unit 1
Biol.Unit 2 (56 KB)
Header - Biol.Unit 2
Biol.Unit 3 (56 KB)
Header - Biol.Unit 3
Biol.Unit 4 (56 KB)
Header - Biol.Unit 4
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