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2D0J
Asym. Unit
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Asym.Unit (171 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (85 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GLCAT-S APO FORM
Authors
:
T. Shiba, S. Kakuda, M. Ishiguro, S. Oka, T. Kawasaki, S. Wakatsuki, R. Kato
Date
:
03 Aug 05 (Deposition) - 18 Jul 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Rossmann-Like Fold, Glucuronyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Shiba, S. Kakuda, M. Ishiguro, I. Morita, S. Oka, T. Kawasaki, S. Wakatsuki, R. Kato
Crystal Structure Of Glcat-S, A Human Glucuronyltransferase, Involved In The Biosynthesis Of The Hnk-1 Carbohydrate Epitope
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
(4, 16)
Info
All Exons
Exon 1.1 (A:78-197 (gaps) | B:78-197 (gaps) ...)
Exon 1.2 (A:198-246 | B:198-246 | C:198-246 ...)
Exon 1.3 (A:246-295 | B:246-295 | C:246-295 ...)
Exon 1.4 (A:296-323 | B:296-323 | C:296-323 ...)
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000230053
1
ENSE00001150538
chr6:
71666741-71665542
1200
B3GA2_HUMAN
1-197
197
4
A:78-197 (gaps)
B:78-197 (gaps)
C:78-197 (gaps)
D:79-197 (gaps)
120
120
120
119
1.2
ENST00000230053
2
ENSE00000758545
chr6:
71603975-71603831
145
B3GA2_HUMAN
198-246
49
4
A:198-246
B:198-246
C:198-246
D:198-246
49
49
49
49
1.3
ENST00000230053
3
ENSE00000758544
chr6:
71571681-71571533
149
B3GA2_HUMAN
246-295
50
4
A:246-295
B:246-295
C:246-295
D:246-295
50
50
50
50
1.4
ENST00000230053
4
ENSE00001150532
chr6:
71571452-71566382
5071
B3GA2_HUMAN
296-323
28
4
A:296-323
B:296-323
C:296-323
D:296-323
28
28
28
28
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2d0ja_ (A:)
1b: SCOP_d2d0jb_ (B:)
1c: SCOP_d2d0jc_ (C:)
1d: SCOP_d2d0jd_ (D:)
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Protein Domains
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(
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
1,3-glucuronyltransferase
(7)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2d0ja_
A:
1b
d2d0jb_
B:
1c
d2d0jc_
C:
1d
d2d0jd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2d0jA00 (A:78-323)
1b: CATH_2d0jB00 (B:78-323)
1c: CATH_2d0jC00 (C:78-323)
1d: CATH_2d0jD00 (D:79-323)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Human (Homo sapiens)
(73)
1a
2d0jA00
A:78-323
1b
2d0jB00
B:78-323
1c
2d0jC00
C:78-323
1d
2d0jD00
D:79-323
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Pfam Domains
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Show PDB file:
Asym.Unit (171 KB)
Header - Asym.Unit
Biol.Unit 1 (85 KB)
Header - Biol.Unit 1
Biol.Unit 2 (85 KB)
Header - Biol.Unit 2
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