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2CZG
Asym. Unit
Info
Asym.Unit (143 KB)
Biol.Unit 1 (138 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROBABLE PHOSPHORIBOSYLGLYCINAMIDE FORMYL TRANSFERASE (PH0318) FROM PYROCOCCUS HORIKOSHII OT3
Authors
:
S. Yoshikawa, R. Arai, T. Kamo-Uchikubo, M. Shirouzu, S. Yokoyama, Rik Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
13 Jul 05 (Deposition) - 13 Jan 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Purine Ribonucleotide Biosynthesis, Phosphoribosylglycinamide Formyltransferase, Purt, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Yoshikawa, R. Arai, T. Kamo-Uchikubo, M. Shirouzu, S. Yokoyama
Crystal Structure Of Probable Phosphoribosylglycinamide Formyl Transferase (Ph0318) From Pyrococcus Horikoshii Ot3
To Be Published
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Hetero Components
(2, 17)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
11
Ligand/Ion
GLYCEROL
2
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:378 , TYR B:382 , ARG B:385
BINDING SITE FOR RESIDUE SO4 B 434
02
AC2
SOFTWARE
ARG B:414 , TRP B:420 , HOH B:506
BINDING SITE FOR RESIDUE SO4 B 435
03
AC3
SOFTWARE
LYS A:378 , TYR A:382 , ARG A:385 , HOH A:520
BINDING SITE FOR RESIDUE SO4 A 434
04
AC4
SOFTWARE
ARG A:414 , TRP A:420
BINDING SITE FOR RESIDUE SO4 A 435
05
AC5
SOFTWARE
HIS B:120 , ARG B:121 , GLU B:122 , ARG B:123 , ILE B:164
BINDING SITE FOR RESIDUE SO4 B 436
06
AC6
SOFTWARE
ARG B:121 , ASN B:290
BINDING SITE FOR RESIDUE SO4 B 437
07
AC7
SOFTWARE
ARG A:40 , GOL A:436 , HOH A:447 , ARG B:40 , PRO B:309 , GLY B:310 , HOH B:457 , HOH B:513
BINDING SITE FOR RESIDUE GOL B 438
08
AC8
SOFTWARE
GLU A:37 , THR A:303 , LEU A:304 , HIS A:307 , PRO A:308 , PRO A:309 , GLY A:310 , PHE A:311 , SER A:312 , HOH A:516 , GOL B:438
BINDING SITE FOR RESIDUE GOL A 436
09
AC9
SOFTWARE
ASN A:370 , TRP A:393 , PRO B:308 , PHE B:337 , PRO B:338
BINDING SITE FOR RESIDUE GOL A 437
10
BC1
SOFTWARE
PRO A:308 , PRO A:327 , PHE A:337 , PRO A:338 , ASN B:370 , TRP B:393
BINDING SITE FOR RESIDUE GOL B 439
11
BC2
SOFTWARE
ASP A:220 , TRP A:330 , ARG A:335
BINDING SITE FOR RESIDUE GOL A 438
12
BC3
SOFTWARE
VAL B:226 , THR B:227 , PHE B:229 , LYS B:264 , GLY B:333 , TYR B:334 , ARG B:335
BINDING SITE FOR RESIDUE GOL B 440
13
BC4
SOFTWARE
THR A:227 , LYS A:264 , HOH A:518 , HOH A:523 , VAL B:2
BINDING SITE FOR RESIDUE GOL A 439
14
BC5
SOFTWARE
ARG A:62 , HOH A:476 , ARG B:62 , SER B:63 , TYR B:64 , ARG B:80
BINDING SITE FOR RESIDUE GOL B 441
15
BC6
SOFTWARE
ASN A:53 , GOL A:441 , THR B:15 , HIS B:61 , ARG B:62 , HOH B:523
BINDING SITE FOR RESIDUE GOL B 442
16
BC7
SOFTWARE
ARG A:358 , GLU B:10 , SER B:18 , GLN B:20 , HOH B:510
BINDING SITE FOR RESIDUE GOL A 440
17
BC8
SOFTWARE
ARG A:62 , SER A:63 , TYR A:64 , ARG A:80 , GOL B:442
BINDING SITE FOR RESIDUE GOL A 441
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2czgA03 (A:204-423)
1b: CATH_2czgB03 (B:204-423)
2a: CATH_2czgA02 (A:132-203)
2b: CATH_2czgB02 (B:132-203)
3a: CATH_2czgA01 (A:2-131)
3b: CATH_2czgB01 (B:2-131)
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Classes
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Homologous Superfamilies
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)
Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Pyrococcus horikoshii ot3. Organism_taxid: 70601. Strain: ot3.
(2)
1a
2czgA03
A:204-423
1b
2czgB03
B:204-423
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Pyrococcus horikoshii ot3. Organism_taxid: 70601. Strain: ot3.
(2)
2a
2czgA02
A:132-203
2b
2czgB02
B:132-203
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.20, no name defined]
(85)
Pyrococcus horikoshii ot3. Organism_taxid: 70601. Strain: ot3.
(2)
3a
2czgA01
A:2-131
3b
2czgB01
B:2-131
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Pfam Domains
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Asym.Unit (143 KB)
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Header - Biol.Unit 1
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