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2CZ6
Asym. Unit
Info
Asym.Unit (88 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (164 KB)
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(1)
Title
:
COMPLEX OF INACTIVE FE-TYPE NHASE WITH CYCLOHEXYL ISOCYANIDE
Authors
:
M. Nojiri, Y. Kawano, K. Hashimoto, N. Kamiya, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
11 Jul 05 (Deposition) - 11 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Cysteine-Sulfinic Acid, Cysteine-Sulfenic Acid, Photo- Reactive, Nitrile, Hydration, Substrate Analogue, Complex, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Lyase
(Keyword Search:
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Reference
:
M. Nojiri, Y. Kawano, K. Hashimoto, N. Kamiya
X-Ray Snap Shots Of Inhibitor Binding Process In Photo-Reactive Nitrile Hydratase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(6, 9)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
2a: S-HYDROXYCYSTEINE (CSOa)
3a: CYCLOHEXYL ISOCYANIDE (CYIa)
4a: FE (III) ION (FEa)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
6a: NITRIC OXIDE (NOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSD
1
Mod. Amino Acid
3-SULFINOALANINE
2
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
CYI
1
Mod. Residue
CYCLOHEXYL ISOCYANIDE
4
FE
1
Ligand/Ion
FE (III) ION
5
MG
4
Ligand/Ion
MAGNESIUM ION
6
NO
1
Ligand/Ion
NITRIC OXIDE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:109 , CSD A:112 , SER A:113 , CSO A:114 , NO A:301
BINDING SITE FOR RESIDUE FE A 300
2
AC2
SOFTWARE
HOH B:1322 , HOH B:1363 , HOH B:1409 , HOH B:1412 , HOH B:1414 , HOH B:1449
BINDING SITE FOR RESIDUE MG B 1303
3
AC3
SOFTWARE
HOH A:1335 , HOH A:1494 , HOH A:1501 , HOH A:1519 , HOH B:1419 , HOH B:1532
BINDING SITE FOR RESIDUE MG A 1304
4
AC4
SOFTWARE
HOH A:1527 , HOH A:1604 , HOH A:1660 , HOH A:1665 , HOH B:1546
BINDING SITE FOR RESIDUE MG A 1305
5
AC5
SOFTWARE
HOH A:1472 , HOH A:1569 , HOH B:1561
BINDING SITE FOR RESIDUE MG A 1306
6
AC6
SOFTWARE
CSD A:112 , SER A:113 , CSO A:114 , FE A:300 , CYI B:1302
BINDING SITE FOR RESIDUE NO A 301
7
AC7
SOFTWARE
TRP A:117 , NO A:301 , HOH A:1373 , TYR B:37 , MET B:40 , ARG B:56 , TYR B:76
BINDING SITE FOR RESIDUE CYI B 1302
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_NHAB_RHOER_001 (M40V, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_NHAB_RHOER_001
*
M
40
V
NHAB_RHOER
---
---
B
M
40
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2cz6b_ (B:)
2a: SCOP_d2cz6a_ (A:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Electron transport accessory proteins
(58)
Family
:
Nitrile hydratase beta chain
(30)
Protein domain
:
Iron-containing nitrile hydratase
(21)
Rhodococcus erythropolis [TaxId: 1833]
(21)
1a
d2cz6b_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nitrile hydratase alpha chain
(36)
Superfamily
:
Nitrile hydratase alpha chain
(36)
Family
:
Nitrile hydratase alpha chain
(35)
Protein domain
:
automated matches
(25)
Rhodococcus erythropolis [TaxId: 1833]
(17)
2a
d2cz6a_
A:
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2cz6A00 (A:9-205)
2a: CATH_2cz6B01 (B:1-110)
3a: CATH_2cz6B02 (B:111-212)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Nitrile Hydratase; Chain A
(34)
Homologous Superfamily
:
Nitrile Hydratase; Chain A
(34)
Rhodococcus erythropolis. Organism_taxid: 1833. Strain: n771.
(12)
1a
2cz6A00
A:9-205
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cyclin A; domain 1
(136)
Homologous Superfamily
:
[code=1.10.472.20, no name defined]
(29)
Rhodococcus erythropolis. Organism_taxid: 1833. Strain: n771.
(12)
2a
2cz6B01
B:1-110
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.50, no name defined]
(46)
Rhodococcus erythropolis. Organism_taxid: 1833. Strain: n771.
(12)
3a
2cz6B02
B:111-212
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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