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2CYZ
Asym. Unit
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Asym.Unit (85 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (158 KB)
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(1)
Title
:
PHOTO-ACTIVATION STATE OF FE-TYPE NHASE IN ANAEROBIC CONDITION
Authors
:
Y. Kawano, K. Hashimoto, M. Odaka, H. Nakayama, K. Takio, I. Endo, N. Kamiya, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
09 Jul 05 (Deposition) - 09 Jan 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Cysteine-Sulfinic Acid, Cysteine-Sulfenic Acid, Post- Translational Modification, Nitrile, Hydration, Non-Hem Iron, Photo-Reactive, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kawano, K. Hashimoto, M. Odaka, H. Nakayama, K. Takio, I. Endo, N. Kamiya
Photo-Activation State Of Fe-Type Nhase In Anaerobic Condition
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
2a: S-HYDROXYCYSTEINE (CSOa)
3a: FE (III) ION (FEa)
4a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSD
1
Mod. Amino Acid
3-SULFINOALANINE
2
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
FE
1
Ligand/Ion
FE (III) ION
4
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:109 , CSD A:112 , SER A:113 , CSO A:114 , HOH A:301
BINDING SITE FOR RESIDUE FE A 300
2
AC2
SOFTWARE
HOH B:1302 , HOH B:1303 , HOH B:1304 , HOH B:1305 , HOH B:1306 , HOH B:1307
BINDING SITE FOR RESIDUE MG B 1301
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_NHAB_RHOER_001 (M40V, chain B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_NHAB_RHOER_001
*
M
40
V
NHAB_RHOER
---
---
B
M
40
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2cyzb_ (B:)
2a: SCOP_d2cyza_ (A:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Electron transport accessory proteins
(58)
Family
:
Nitrile hydratase beta chain
(30)
Protein domain
:
Iron-containing nitrile hydratase
(21)
Rhodococcus erythropolis [TaxId: 1833]
(21)
1a
d2cyzb_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nitrile hydratase alpha chain
(36)
Superfamily
:
Nitrile hydratase alpha chain
(36)
Family
:
Nitrile hydratase alpha chain
(35)
Protein domain
:
automated matches
(25)
Rhodococcus erythropolis [TaxId: 1833]
(17)
2a
d2cyza_
A:
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2cyzA00 (A:8-204)
2a: CATH_2cyzB01 (B:1-110)
3a: CATH_2cyzB02 (B:111-211)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Nitrile Hydratase; Chain A
(34)
Homologous Superfamily
:
Nitrile Hydratase; Chain A
(34)
Rhodococcus erythropolis. Organism_taxid: 1833. Strain: n771.
(12)
1a
2cyzA00
A:8-204
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cyclin A; domain 1
(136)
Homologous Superfamily
:
[code=1.10.472.20, no name defined]
(29)
Rhodococcus erythropolis. Organism_taxid: 1833. Strain: n771.
(12)
2a
2cyzB01
B:1-110
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.50, no name defined]
(46)
Rhodococcus erythropolis. Organism_taxid: 1833. Strain: n771.
(12)
3a
2cyzB02
B:111-211
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (85 KB)
Header - Asym.Unit
Biol.Unit 1 (80 KB)
Header - Biol.Unit 1
Biol.Unit 2 (158 KB)
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