PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2CXN
Asym. Unit
Info
Asym.Unit (203 KB)
Biol.Unit 1 (199 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE AMF / PHOSPHATE COMPLEX
Authors
:
N. Tanaka, A. Haga, N. Naba, K. Shiraiwa, Y. Kusakabe, K. Hashimoto, T. F H. Nagase, A. Raz, K. T. Nakamura
Date
:
30 Jun 05 (Deposition) - 23 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Tanaka, A. Haga, N. Naba, K. Shiraiwa, Y. Kusakabe, K. Hashimoto, T. Funasaka, H. Nagase, A. Raz, K. T. Nakamura
Crystal Structures Of Mouse Autocrine Motility Factor In Complex With Carbohydrate Phosphate Inhibitors Provide Insight Into Structure-Activity Relationship Of The Inhibitors
J. Mol. Biol. V. 356 312 2006
[
close entry info
]
Hetero Components
(2, 5)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:160 , SER A:210 , LYS A:211 , THR A:212 , THR A:215 , HOH A:1707 , HOH A:1847 , HOH A:1916 , HOH A:1995
BINDING SITE FOR RESIDUE PO4 A 1601
2
AC2
SOFTWARE
ASP A:140 , TRP A:141 , LYS A:142 , LYS A:241 , HOH A:1950 , HOH A:2302
BINDING SITE FOR RESIDUE GOL A 1701
3
AC3
SOFTWARE
ILE A:549 , ARG A:553 , GLY B:419 , HIS B:422 , LYS B:423 , LEU B:426 , HOH B:1926 , HOH B:1947
BINDING SITE FOR RESIDUE GOL B 1702
4
AC4
SOFTWARE
ARG B:135 , TRP B:141 , LYS B:142 , HOH B:1857
BINDING SITE FOR RESIDUE GOL B 1703
5
AC5
SOFTWARE
GLY A:419 , HIS A:422 , LYS A:423 , LEU A:426 , HOH A:1839 , HOH A:1956 , ARG B:553
BINDING SITE FOR RESIDUE GOL A 1704
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: P_GLUCOSE_ISOMERASE_3 (A:7-553,B:7-553)
2: P_GLUCOSE_ISOMERASE_1 (A:268-281,B:268-281)
3: P_GLUCOSE_ISOMERASE_2 (A:502-519,B:502-519)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
P_GLUCOSE_ISOMERASE_3
PS51463
Glucose-6-phosphate isomerase family profile.
G6PI_MOUSE
7-553
2
A:7-553
B:7-553
2
P_GLUCOSE_ISOMERASE_1
PS00765
Phosphoglucose isomerase signature 1.
G6PI_MOUSE
268-281
2
A:268-281
B:268-281
3
P_GLUCOSE_ISOMERASE_2
PS00174
Phosphoglucose isomerase signature 2.
G6PI_MOUSE
502-519
2
A:502-519
B:502-519
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2cxna_ (A:)
1b: SCOP_d2cxnb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SIS domain
(85)
Superfamily
:
SIS domain
(85)
Family
:
Phosphoglucose isomerase, PGI
(37)
Protein domain
:
automated matches
(13)
Mouse (Mus musculus) [TaxId: 10090]
(9)
1a
d2cxna_
A:
1b
d2cxnb_
B:
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2cxnA02 (A:100-294)
1b: CATH_2cxnB02 (B:100-294)
1c: CATH_2cxnA01 (A:1-99,A:295-515)
1d: CATH_2cxnB01 (B:1-99,B:295-515)
2a: CATH_2cxnA03 (A:516-556)
2b: CATH_2cxnB03 (B:516-556)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glucose-6-phosphate isomerase like protein; domain 1
(105)
House mouse (Mus musculus)
(12)
1a
2cxnA02
A:100-294
1b
2cxnB02
B:100-294
1c
2cxnA01
A:1-99,A:295-515
1d
2cxnB01
B:1-99,B:295-515
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Phosphoglucose isomerase, C-terminal domain
(32)
Homologous Superfamily
:
[code=1.10.1390.10, no name defined]
(32)
House mouse (Mus musculus)
(12)
2a
2cxnA03
A:516-556
2b
2cxnB03
B:516-556
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (203 KB)
Header - Asym.Unit
Biol.Unit 1 (199 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2CXN
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
