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2CWW
Asym. Unit
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Asym.Unit (129 KB)
Biol.Unit 1 (124 KB)
Biol.Unit 2 (126 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TTHA1280, A PUTATIVE SAM-DEPENDENT RNA METHYLTRANSFERASE, IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE
Authors
:
A. A. Pioszak, K. Murayama, N. Nakagawa, A. Ebihara, S. Kuramitsu, M. Sh S. Yokoyama, Riken Structural Genomics/Proteomics Initiative
Date
:
27 Jun 05 (Deposition) - 11 Oct 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Keywords
:
Structural Genomics, Sam-Dependent Rna Methyltransferase, S-Adenosyl- L-Homocysteine, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Pioszak, K. Murayama, N. Nakagawa, A. Ebihara, S. Kuramitsu, M. Shirouzu, S. Yokoyama
Structures Of A Putative Rna 5-Methyluridine Methyltransferase, Thermus Thermophilus Ttha1280, And Its Complex With S-Adenosyl-L-Homocysteine.
Acta Crystallogr. , Sect. F V. 61 867 2005
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: GLYCEROL (GOLa)
3a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
3b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
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No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
GOL
1
Ligand/Ion
GLYCEROL
3
SAH
2
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
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Sites
(4, 4)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:195 , ARG A:202 , PHE A:217 , SER A:218 , TYR A:219 , PHE A:223 , ASP A:238 , SER A:239 , ASN A:265 , ALA A:266 , ASP A:286 , HOH A:501
BINDING SITE FOR RESIDUE SAH A 500
2
AC2
SOFTWARE
TYR B:195 , ARG B:202 , PHE B:217 , SER B:218 , TYR B:219 , PHE B:223 , ASP B:238 , SER B:239 , ASN B:265 , ALA B:266 , ASP B:286 , PRO B:288
BINDING SITE FOR RESIDUE SAH B 501
3
AC3
SOFTWARE
PHE A:21 , ARG A:88
BINDING SITE FOR RESIDUE ACY A 400
4
AC4
SOFTWARE
ARG A:16 , ARG A:42 , PHE A:43 , LEU A:44
BINDING SITE FOR RESIDUE GOL A 401
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2cwwa1 (A:1-64)
1b: SCOP_d2cwwb1 (B:1-64)
2a: SCOP_d2cwwa2 (A:65-382)
2b: SCOP_d2cwwb2 (B:65-382)
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Class
:
All beta proteins
(24004)
Fold
:
PUA domain-like
(96)
Superfamily
:
PUA domain-like
(96)
Family
:
Hypothetical RNA methyltransferase domain (HRMD)
(6)
Protein domain
:
Hypothetical protein TTHA1280, N-terminal domain
(3)
Thermus thermophilus [TaxId: 274]
(3)
1a
d2cwwa1
A:1-64
1b
d2cwwb1
B:1-64
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
hypothetical RNA methyltransferase
(7)
Protein domain
:
Hypothetical protein TTHA1280, middle and C-terminal domains
(3)
Thermus thermophilus [TaxId: 274]
(3)
2a
d2cwwa2
A:65-382
2b
d2cwwb2
B:65-382
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2cwwB03 (B:172-382)
1b: CATH_2cwwA03 (A:172-382)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(7)
1a
2cwwB03
B:172-382
1b
2cwwA03
A:172-382
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Pfam Domains
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Asym.Unit (129 KB)
Header - Asym.Unit
Biol.Unit 1 (124 KB)
Header - Biol.Unit 1
Biol.Unit 2 (126 KB)
Header - Biol.Unit 2
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