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2CW8
Biol. Unit 1
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Asym.Unit (104 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF INTEIN HOMING ENDONUCLEASE II
Authors
:
H. Matsumura, H. Takahashi, T. Inoue, H. Hashimoto, M. Nishioka, S. Fuj M. Takagi, T. Imanaka, Y. Kai
Date
:
17 Jun 05 (Deposition) - 18 Apr 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Matsumura, H. Takahashi, T. Inoue, T. Yamamoto, H. Hashimoto, M. Nishioka, S. Fujiwara, M. Takagi, T. Imanaka, Y. Kai
Crystal Structure Of Intein Homing Endonuclease Ii Encoded In Dna Polymerase Gene From Hyperthermophilic Archaeon Thermococcus Kodakaraensis Strain Kod1
Proteins V. 63 711 2006
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Hetero Components
(3, 21)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
MSE
9
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:75 , THR A:93 , SER A:94 , GLY A:95 , HOH A:2085 , HOH A:2203
BINDING SITE FOR RESIDUE SO4 A 1001
02
AC2
SOFTWARE
ASN A:56 , ARG A:58 , HOH A:2247
BINDING SITE FOR RESIDUE SO4 A 1002
03
AC3
SOFTWARE
LYS A:161 , PHE A:164 , ARG A:187 , HIS A:191
BINDING SITE FOR RESIDUE SO4 A 1003
04
AC4
SOFTWARE
ARG A:186 , ARG A:190 , LEU A:200
BINDING SITE FOR RESIDUE SO4 A 1004
05
AC5
SOFTWARE
THR A:262 , GLY A:265 , PHE A:266 , PRO A:339 , LYS A:340 , LYS A:341 , HOH A:2159
BINDING SITE FOR RESIDUE SO4 A 1005
06
AC6
SOFTWARE
LYS A:441 , HIS A:449 , SER A:469 , PRO A:470 , GLN A:471 , HOH A:2193
BINDING SITE FOR RESIDUE SO4 A 1006
07
AC7
SOFTWARE
LYS A:418 , TYR A:429 , HOH A:2039 , HOH A:2246 , HOH A:2252 , HOH A:2253 , HOH A:2256
BINDING SITE FOR RESIDUE SO4 A 1007
08
AC8
SOFTWARE
ARG A:83 , ARG A:89 , HOH A:2233
BINDING SITE FOR RESIDUE SO4 A 1008
09
AC9
SOFTWARE
ILE A:156 , LYS A:161 , PHE A:164 , HIS A:191 , TYR A:220 , GLU A:254 , GLU A:257 , TRP A:258
BINDING SITE FOR RESIDUE GOL A 2001
10
BC1
SOFTWARE
VAL A:134 , ASN A:136 , LEU A:140 , ASP A:211 , HOH A:2104 , HOH A:2164 , HOH A:2217
BINDING SITE FOR RESIDUE GOL A 2002
11
BC2
SOFTWARE
ASN A:136 , LEU A:208 , ASP A:209 , TRP A:210 , ASP A:211 , LEU A:252 , HOH A:2164
BINDING SITE FOR RESIDUE GOL A 2003
12
BC3
SOFTWARE
THR A:144 , PRO A:145 , GLU A:146 , HOH A:2079 , HOH A:2208 , HOH A:2209
BINDING SITE FOR RESIDUE GOL A 2006
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: INTEIN_N_TER (A:37-100)
2: INTEIN_ENDONUCLEASE (A:281-414)
3: INTEIN_C_TER (A:514-537)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTEIN_N_TER
PS50817
Intein N-terminal splicing motif profile.
DPOL_THEKO
407-470
888-951
1
-
A:37-100
2
INTEIN_ENDONUCLEASE
PS50819
Intein DOD-type homing endonuclease domain profile.
DPOL_THEKO
524-665
1132-1265
1
-
A:281-414
3
INTEIN_C_TER
PS50818
Intein C-terminal splicing motif profile.
DPOL_THEKO
745-767
1365-1389
1
-
A:514-537
[
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]
Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (104 KB)
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