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2CVX
Asym. Unit
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Asym.Unit (120 KB)
Biol.Unit 1 (224 KB)
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(1)
Title
:
STRUCTURES OF YEAST RIBONUCLEOTIDE REDUCTASE I
Authors
:
H. Xu, C. Faber, T. Uchiki, J. W. Fairman, J. Racca, C. Dealwis
Date
:
14 Jun 05 (Deposition) - 07 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Eukaryotic, Ribonucleotide Reductase, Dntp Regulation, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Xu, C. Faber, T. Uchiki, J. W. Fairman, J. Racca, C. Dealwis
Structures Of Eukaryotic Ribonucleotide Reductase I Provide Insights Into Dntp Regulation
Proc. Natl. Acad. Sci. Usa V. 103 4022 2006
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTa)
3a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
DGT
1
Ligand/Ion
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
3
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
DGT A:1001
BINDING SITE FOR RESIDUE MG A 2001
2
AC2
SOFTWARE
ASP A:226 , SER A:227 , ILE A:228 , LYS A:243 , ARG A:256 , ILE A:262 , ALA A:263 , GLY A:264 , ASN A:270 , TYR A:285 , ASP A:287 , GLY A:289 , GLY A:290 , MG A:2001 , HOH A:2014 , HOH A:2017 , HOH A:2018 , HOH A:2021 , HOH A:2022 , HOH A:2097 , HOH A:2114
BINDING SITE FOR RESIDUE DGT A 1001
3
AC3
SOFTWARE
ALA A:201 , SER A:202 , SER A:217 , CYS A:218 , GLY A:246 , GLY A:247 , GLN A:288 , ARG A:293 , ALA A:296 , ASN A:426 , CYS A:428 , GLU A:430 , LEU A:445 , MET A:606 , PRO A:607 , THR A:608 , ALA A:609 , SER A:610 , THR A:611 , HOH A:2006 , HOH A:2007 , HOH A:2010 , HOH A:2019 , HOH A:2145 , HOH A:2164 , HOH A:2215
BINDING SITE FOR RESIDUE ADP A 1002
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
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1: RIBORED_LARGE (A:585-607)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBORED_LARGE
PS00089
Ribonucleotide reductase large subunit signature.
RIR1_YEAST
585-607
1
A:585-607
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Exons
(1, 1)
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All Exons
Exon 1.1 (A:76-746 (gaps))
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1: Boundary -/1.1
2: Boundary 1.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YER070W
1
YER070W.1
V:298948-301614
2667
RIR1_YEAST
1-888
888
1
A:76-746 (gaps)
671
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SCOP Domains
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Asymmetric Unit 1
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