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2CTF
Asym. Unit
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Asym.Unit (513 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE 4TH KH TYPE I DOMAIN FROM HUMAN VIGILIN
Authors
:
T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
24 May 05 (Deposition) - 24 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
K Homology Type I Domain, Rna-Binding, Cell Sterol Metabolism, Beta-Alpha-Alpha-Beta-Beta-Alpha Structure, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The 4Th Kh Type I Domain From Human Vigilin
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_024511 (S80S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024511
N
418
S
VIGLN_HUMAN
Polymorphism
7578199
A
S
80
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: KH_TYPE_1 (-|-|-|A:26-86|A:97-102|-|-|-|-|-|-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KH_TYPE_1
PS50084
Type-1 KH domain profile.
VIGLN_HUMAN
150-212
295-357
222-284
364-424
435-497
507-570
581-643
653-716
727-790
800-863
873-967
972-1034
1052-1117
1127-1190
2
-
-
-
A:26-86
A:97-102
-
-
-
-
-
-
-
-
-
[
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]
Exons
(5, 5)
Info
All Exons
Exon 1.18b (A:1-22 (gaps))
Exon 1.18h (A:23-58)
Exon 1.19 (A:59-93)
Exon 1.20c (A:94-98 (gaps))
Exon 1.21c (A:99-102 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.17c/1.18b
2: Boundary 1.18b/1.18h
3: Boundary 1.18h/1.19
4: Boundary 1.19/1.20c
5: Boundary 1.20c/1.21c
6: Boundary 1.21c/1.23c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000310931
2a
ENSE00001923164
chr2:
242255257-242254985
273
VIGLN_HUMAN
-
0
0
-
-
1.10c
ENST00000310931
10c
ENSE00001381224
chr2:
242207956-242207892
65
VIGLN_HUMAN
-
0
0
-
-
1.12f
ENST00000310931
12f
ENSE00002183442
chr2:
242206321-242206209
113
VIGLN_HUMAN
1-26
26
0
-
-
1.14e
ENST00000310931
14e
ENSE00001762971
chr2:
242204020-242203863
158
VIGLN_HUMAN
26-78
53
0
-
-
1.15i
ENST00000310931
15i
ENSE00001743253
chr2:
242202341-242202126
216
VIGLN_HUMAN
79-150
72
0
-
-
1.16c
ENST00000310931
16c
ENSE00001796682
chr2:
242196221-242196015
207
VIGLN_HUMAN
151-219
69
0
-
-
1.17c
ENST00000310931
17c
ENSE00001605751
chr2:
242195814-242195599
216
VIGLN_HUMAN
220-291
72
0
-
-
1.18b
ENST00000310931
18b
ENSE00000787283
chr2:
242194995-242194789
207
VIGLN_HUMAN
292-360
69
1
A:1-22 (gaps)
49
1.18h
ENST00000310931
18h
ENSE00000787284
chr2:
242194573-242194466
108
VIGLN_HUMAN
361-396
36
1
A:23-58
36
1.19
ENST00000310931
19
ENSE00000787285
chr2:
242192912-242192808
105
VIGLN_HUMAN
397-431
35
1
A:59-93
35
1.20c
ENST00000310931
20c
ENSE00000787286
chr2:
242192450-242192372
79
VIGLN_HUMAN
432-458
27
1
A:94-98 (gaps)
24
1.21c
ENST00000310931
21c
ENSE00000787287
chr2:
242189395-242189256
140
VIGLN_HUMAN
458-504
47
1
A:99-102 (gaps)
13
1.23c
ENST00000310931
23c
ENSE00000787288
chr2:
242187763-242187659
105
VIGLN_HUMAN
505-539
35
0
-
-
1.24a
ENST00000310931
24a
ENSE00000787289
chr2:
242187531-242187418
114
VIGLN_HUMAN
540-577
38
0
-
-
1.25b
ENST00000310931
25b
ENSE00000787290
chr2:
242186557-242186471
87
VIGLN_HUMAN
578-606
29
0
-
-
1.26a
ENST00000310931
26a
ENSE00000787291
chr2:
242186298-242186167
132
VIGLN_HUMAN
607-650
44
0
-
-
1.28b
ENST00000310931
28b
ENSE00000787292
chr2:
242182093-242181875
219
VIGLN_HUMAN
651-723
73
0
-
-
1.29d
ENST00000310931
29d
ENSE00000787294
chr2:
242179537-242179316
222
VIGLN_HUMAN
724-797
74
0
-
-
1.30b
ENST00000310931
30b
ENSE00000787296
chr2:
242179235-242179017
219
VIGLN_HUMAN
798-870
73
0
-
-
1.31b
ENST00000310931
31b
ENSE00000787298
chr2:
242178202-242178064
139
VIGLN_HUMAN
871-917
47
0
-
-
1.32b
ENST00000310931
32b
ENSE00000787300
chr2:
242176184-242176030
155
VIGLN_HUMAN
917-968
52
0
-
-
1.33b
ENST00000310931
33b
ENSE00000787302
chr2:
242175009-242174905
105
VIGLN_HUMAN
969-1003
35
0
-
-
1.33g
ENST00000310931
33g
ENSE00000787304
chr2:
242174670-242174536
135
VIGLN_HUMAN
1004-1048
45
0
-
-
1.34b
ENST00000310931
34b
ENSE00000787306
chr2:
242173378-242173235
144
VIGLN_HUMAN
1049-1096
48
0
-
-
1.35c
ENST00000310931
35c
ENSE00002161677
chr2:
242170359-242170174
186
VIGLN_HUMAN
1097-1158
62
0
-
-
1.36b
ENST00000310931
36b
ENSE00001636515
chr2:
242169684-242169568
117
VIGLN_HUMAN
1159-1197
39
0
-
-
1.36g
ENST00000310931
36g
ENSE00001642879
chr2:
242169376-242169248
129
VIGLN_HUMAN
1198-1240
43
0
-
-
1.36l
ENST00000310931
36l
ENSE00001556167
chr2:
242169102-242168627
476
VIGLN_HUMAN
1241-1268
28
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2ctfa1 (A:7-96)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Eukaryotic type KH-domain (KH-domain type I)
(51)
Superfamily
:
Eukaryotic type KH-domain (KH-domain type I)
(51)
Family
:
Eukaryotic type KH-domain (KH-domain type I)
(40)
Protein domain
:
Vigilin
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2ctfa1
A:7-96
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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