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2CT1
Asym. Unit
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Asym.Unit (390 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF TRANSCRIPTIONAL REPRESSOR CTCF PROTEIN
Authors
:
K. Miyamoto, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
23 May 05 (Deposition) - 23 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Transcriptional Repressor Ctcf, Ccctc-Binding Factor, Zinc Finger, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Miyamoto, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The Zinc Finger Domain Of Transcriptional Repressor Ctcf Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:18 , CYS A:21 , HIS A:34 , HIS A:39
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:48 , CYS A:51 , HIS A:64 , HIS A:69
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_013144 (R57Q, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013144
R
448
Q
CTCF_HUMAN
Unclassified
---
A
R
57
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_FINGER_C2H2_1 (-|-|-|A:18-39|A:48-69|-|-|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
CTCF_HUMAN
268-288
296-316
324-345
409-430
439-460
469-489
497-517
525-546
2
-
-
-
A:18-39
A:48-69
-
-
-
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Exons
(3, 3)
Info
All Exons
Exon 1.6 (A:1-12 (gaps))
Exon 1.7 (A:12-62)
Exon 1.8 (A:62-77 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.5b/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000264010
1a
ENSE00001558712
chr16:
67596310-67596627
318
CTCF_HUMAN
-
0
0
-
-
1.2
ENST00000264010
2
ENSE00001664803
chr16:
67605051-67605167
117
CTCF_HUMAN
-
0
0
-
-
1.3
ENST00000264010
3
ENSE00002191256
chr16:
67644727-67645516
790
CTCF_HUMAN
1-261
261
0
-
-
1.4
ENST00000264010
4
ENSE00001645353
chr16:
67645854-67646024
171
CTCF_HUMAN
261-318
58
0
-
-
1.5b
ENST00000264010
5b
ENSE00001787619
chr16:
67650648-67650781
134
CTCF_HUMAN
318-362
45
0
-
-
1.6
ENST00000264010
6
ENSE00000690280
chr16:
67654600-67654720
121
CTCF_HUMAN
363-403
41
1
A:1-12 (gaps)
29
1.7
ENST00000264010
7
ENSE00000690296
chr16:
67655345-67655494
150
CTCF_HUMAN
403-453
51
1
A:12-62
51
1.8
ENST00000264010
8
ENSE00000690297
chr16:
67660458-67660618
161
CTCF_HUMAN
453-506
54
1
A:62-77 (gaps)
18
1.9a
ENST00000264010
9a
ENSE00001251143
chr16:
67662273-67662455
183
CTCF_HUMAN
507-567
61
0
-
-
1.10
ENST00000264010
10
ENSE00000690303
chr16:
67663301-67663436
136
CTCF_HUMAN
568-613
46
0
-
-
1.11
ENST00000264010
11
ENSE00000690304
chr16:
67670593-67670754
162
CTCF_HUMAN
613-667
55
0
-
-
1.12a
ENST00000264010
12a
ENSE00001548234
chr16:
67671591-67673086
1496
CTCF_HUMAN
667-727
61
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ct1a1 (A:44-71)
1b: SCOP_d2ct1a2 (A:8-43)
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Protein Domains
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Organisms
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(
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Class
:
Small proteins
(3458)
Fold
:
beta-beta-alpha zinc fingers
(183)
Superfamily
:
beta-beta-alpha zinc fingers
(183)
Family
:
Classic zinc finger, C2H2
(162)
Protein domain
:
Transcriptional repressor CTCF
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2ct1a1
A:44-71
1b
d2ct1a2
A:8-43
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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