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2CR8
Asym. Unit
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Asym.Unit (267 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE ZF-RANBP DOMAIN OF P53-BINDING PROTEIN MDM4
Authors
:
H. P. Zhang, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
20 May 05 (Deposition) - 20 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Zf-Ranbp Domain; Mdm4 Protein; P53-Binding Protein Mdm4; Mdm2-Like P53-Binding De Protein; Mdmx Protein; Double Minute 4 Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Cell Cycle
(Keyword Search:
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Reference
:
H. P. Zhang, F. Hayashi, S. Yokoyama
Solution Structure Of The Zf-Ranbp Domain Of P53-Binding Protein Mdm4
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:14 , CYS A:17 , CYS A:28 , CYS A:31
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ZF_RANBP2_2 (A:8-37)
2: ZF_RANBP2_1 (A:12-31)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_RANBP2_2
PS50199
Zinc finger RanBP2 type profile.
MDM4_HUMAN
300-329
1
A:8-37
2
ZF_RANBP2_1
PS01358
Zinc finger RanBP2-type signature.
MDM4_HUMAN
304-323
1
A:12-31
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Exons
(3, 3)
Info
All Exons
Exon 1.10b (A:1-6 (gaps))
Exon 1.12b (A:7-9 (gaps))
Exon 1.13e (A:10-53)
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All Exon Boundaries
1: Boundary 1.9d/1.10b
2: Boundary 1.10b/1.11b
3: Boundary 1.11b/1.12b
4: Boundary 1.12b/1.13e
5: Boundary 1.13e/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367182
1a
ENSE00001443738
chr1:
204485511-204485637
127
MDM4_HUMAN
-
0
0
-
-
1.2a
ENST00000367182
2a
ENSE00002156140
chr1:
204494612-204494724
113
MDM4_HUMAN
1-26
26
0
-
-
1.3
ENST00000367182
3
ENSE00001039934
chr1:
204495488-204495562
75
MDM4_HUMAN
27-51
25
0
-
-
1.4
ENST00000367182
4
ENSE00001039926
chr1:
204499812-204499945
134
MDM4_HUMAN
52-96
45
0
-
-
1.5a
ENST00000367182
5a
ENSE00001039924
chr1:
204501319-204501374
56
MDM4_HUMAN
96-115
20
0
-
-
1.8a
ENST00000367182
8a
ENSE00001039927
chr1:
204506558-204506625
68
MDM4_HUMAN
115-137
23
0
-
-
1.9d
ENST00000367182
9d
ENSE00001039922
chr1:
204507337-204507436
100
MDM4_HUMAN
138-171
34
0
-
-
1.10b
ENST00000367182
10b
ENSE00001075004
chr1:
204511912-204512072
161
MDM4_HUMAN
171-224
54
1
A:1-6 (gaps)
15
1.11b
ENST00000367182
11b
ENSE00001074998
chr1:
204513663-204513812
150
MDM4_HUMAN
225-274
50
0
-
-
1.12b
ENST00000367182
12b
ENSE00001075005
chr1:
204515925-204516005
81
MDM4_HUMAN
275-301
27
1
A:7-9 (gaps)
23
1.13e
ENST00000367182
13e
ENSE00001123001
chr1:
204518241-204527248
9008
MDM4_HUMAN
302-490
189
1
A:10-53
44
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2cr8a1 (A:8-48)
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Organisms
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Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Ran binding protein zinc finger-like
(16)
Family
:
Ran binding protein zinc finger-like
(16)
Protein domain
:
MDM4
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2cr8a1
A:8-48
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CATH Domains
(0, 0)
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Pfam Domains
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