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2CQH
Asym. Unit
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Asym.Unit (471 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN OF IGF-II MRNA-BINDING PROTEIN 2
Authors
:
S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
20 May 05 (Deposition) - 20 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rna Recognition Motif, Rrm, Rna Binding Domain, Rbd, Rnp, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Rna Binding Domain Of Igf-Ii Mrna-Binding Protein 2
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (A:3-76|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
IF2B2_HUMAN
3-76
82-157
1
A:3-76
-
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Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:1-60)
Exon 1.2b (A:60-80)
Exon 1.5 (A:80-81)
Exon 1.9c (A:82-87 (gaps))
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.5
4: Boundary 1.5/1.6a
5: Boundary 1.8b/1.9c
6: Boundary 1.9c/1.11
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000382199
1a
ENSE00001952994
chr3:
185542844-185542571
274
IF2B2_HUMAN
1-60
60
1
A:1-60
60
1.2b
ENST00000382199
2b
ENSE00001720946
chr3:
185541001-185540941
61
IF2B2_HUMAN
60-80
21
1
A:60-80
21
1.5
ENST00000382199
5
ENSE00001029234
chr3:
185416135-185416087
49
IF2B2_HUMAN
80-96
17
1
A:80-81
2
1.6a
ENST00000382199
6a
ENSE00001029227
chr3:
185414451-185414400
52
IF2B2_HUMAN
97-114
18
0
-
-
1.8b
ENST00000382199
8b
ENSE00001029221
chr3:
185410550-185410487
64
IF2B2_HUMAN
114-135
22
0
-
-
1.9c
ENST00000382199
9c
ENSE00001029224
chr3:
185407415-185407143
273
IF2B2_HUMAN
135-226
92
1
A:82-87 (gaps)
12
1.11
ENST00000382199
11
ENSE00001079604
chr3:
185404979-185404845
135
IF2B2_HUMAN
226-271
46
0
-
-
1.12a
ENST00000382199
12a
ENSE00001079602
chr3:
185393701-185393579
123
IF2B2_HUMAN
271-312
42
0
-
-
1.13a
ENST00000382199
13a
ENSE00001079607
chr3:
185393219-185393084
136
IF2B2_HUMAN
312-357
46
0
-
-
1.14
ENST00000382199
14
ENSE00001235323
chr3:
185390457-185390329
129
IF2B2_HUMAN
358-400
43
0
-
-
1.15
ENST00000382199
15
ENSE00001029235
chr3:
185376197-185376129
69
IF2B2_HUMAN
401-423
23
0
-
-
1.16
ENST00000382199
16
ENSE00001029239
chr3:
185375190-185375074
117
IF2B2_HUMAN
424-462
39
0
-
-
1.17
ENST00000382199
17
ENSE00001151826
chr3:
185369956-185369882
75
IF2B2_HUMAN
463-487
25
0
-
-
1.18a
ENST00000382199
18a
ENSE00001029232
chr3:
185367322-185367191
132
IF2B2_HUMAN
488-531
44
0
-
-
1.19a
ENST00000382199
19a
ENSE00001029236
chr3:
185364926-185364813
114
IF2B2_HUMAN
532-569
38
0
-
-
1.20c
ENST00000382199
20c
ENSE00001863328
chr3:
185363411-185361527
1885
IF2B2_HUMAN
570-599
30
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2cqha1 (A:2-81)
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
IGF-II mRNA-binding protein 2 isoform A
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2cqha1
A:2-81
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CATH Domains
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Chain A
Asymmetric Unit 1
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