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Asym.Unit (512 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF IN PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E
Authors
:
T. Someya, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
19 May 05 (Deposition) - 19 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rna Recognition Motif, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Someya, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Rna Recognition Motif In Peptidyl-Prolyl Cis-Trans Isomerase E
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
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1: RRM (A:6-84)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
PPIE_HUMAN
6-84
1
A:6-84
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Exons
(6, 6)
Info
All Exons
Exon 1.3c (A:1-11)
Exon 1.5b (A:11-44)
Exon 1.6a (A:44-58)
Exon 1.7a (A:59-67)
Exon 1.7e (A:68-92 (gaps))
Exon 1.8 (A:93-95 (gaps))
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1: Boundary -/1.3c
2: Boundary 1.3c/1.5b
3: Boundary 1.5b/1.6a
4: Boundary 1.6a/1.7a
5: Boundary 1.7a/1.7e
6: Boundary 1.7e/1.8
7: Boundary 1.8/1.9b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000324379
3c
ENSE00001829050
chr1:
40204554-40204603
50
PPIE_HUMAN
1-11
11
1
A:1-11
11
1.5b
ENST00000324379
5b
ENSE00001614710
chr1:
40205837-40205935
99
PPIE_HUMAN
11-44
34
1
A:11-44
34
1.6a
ENST00000324379
6a
ENSE00001667693
chr1:
40207038-40207081
44
PPIE_HUMAN
44-58
15
1
A:44-58
15
1.7a
ENST00000324379
7a
ENSE00001735648
chr1:
40207567-40207593
27
PPIE_HUMAN
59-67
9
1
A:59-67
9
1.7e
ENST00000324379
7e
ENSE00000899667
chr1:
40208888-40208969
82
PPIE_HUMAN
68-95
28
1
A:68-92 (gaps)
27
1.8
ENST00000324379
8
ENSE00000899665
chr1:
40209496-40209596
101
PPIE_HUMAN
95-128
34
1
A:93-95 (gaps)
11
1.9b
ENST00000324379
9b
ENSE00000767971
chr1:
40211047-40211170
124
PPIE_HUMAN
129-170
42
0
-
-
1.10
ENST00000324379
10
ENSE00000899661
chr1:
40214575-40214760
186
PPIE_HUMAN
170-232
63
0
-
-
1.11a
ENST00000324379
11a
ENSE00002169791
chr1:
40218582-40218724
143
PPIE_HUMAN
232-279
48
0
-
-
1.12c
ENST00000324379
12c
ENSE00002143267
chr1:
40218959-40219379
421
PPIE_HUMAN
280-301
22
0
-
-
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d2cqba1 (A:1-89)
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Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2cqba1
A:1-89
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CATH Domains
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Chain A
Asymmetric Unit 1
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