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2CQ4
Asym. Unit
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Asym.Unit (589 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA BINDING MOTIF PROTEIN 23
Authors
:
K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
19 May 05 (Deposition) - 19 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rrm Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of Rna Binding Domain In Rna Binding Motif Protein 23
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_052221 (D168N, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052221
D
184
N
RBM23_HUMAN
Polymorphism
34246954
A
D
168
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (A:234-238|A:150-227)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
RBM23_HUMAN
263-341
166-243
2
A:234-238
A:150-227
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Exons
(6, 6)
Info
All Exons
Exon 1.3 (A:125-130 (gaps))
Exon 1.6 (A:132-136)
Exon 1.7 (A:136-175)
Exon 1.8 (A:176-226)
Exon 1.9 (A:227-233)
Exon 1.10 (A:234-238)
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.5b/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10
8: Boundary 1.10/1.12
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000359890
1
ENSE00001423747
chr14:
23388396-23388208
189
RBM23_HUMAN
-
0
0
-
-
1.2
ENST00000359890
2
ENSE00002198998
chr14:
23380612-23380537
76
RBM23_HUMAN
1-22
22
0
-
-
1.3
ENST00000359890
3
ENSE00001759900
chr14:
23378804-23378692
113
RBM23_HUMAN
23-60
38
1
A:125-130 (gaps)
8
1.4
ENST00000359890
4
ENSE00001688900
chr14:
23377589-23377542
48
RBM23_HUMAN
60-76
17
0
-
-
1.5b
ENST00000359890
5b
ENSE00001149981
chr14:
23375577-23375404
174
RBM23_HUMAN
76-134
59
0
-
-
1.6
ENST00000359890
6
ENSE00001149977
chr14:
23374868-23374815
54
RBM23_HUMAN
134-152
19
1
A:132-136
5
1.7
ENST00000359890
7
ENSE00000653785
chr14:
23374662-23374545
118
RBM23_HUMAN
152-191
40
1
A:136-175
40
1.8
ENST00000359890
8
ENSE00001149963
chr14:
23374455-23374303
153
RBM23_HUMAN
192-242
51
1
A:176-226
51
1.9
ENST00000359890
9
ENSE00001099497
chr14:
23374221-23374084
138
RBM23_HUMAN
243-288
46
1
A:227-233
7
1.10
ENST00000359890
10
ENSE00001099492
chr14:
23373535-23373470
66
RBM23_HUMAN
289-310
22
1
A:234-238
5
1.12
ENST00000359890
12
ENSE00001099495
chr14:
23371591-23371396
196
RBM23_HUMAN
311-376
66
0
-
-
1.13
ENST00000359890
13
ENSE00001099490
chr14:
23371308-23371189
120
RBM23_HUMAN
376-416
41
0
-
-
1.14
ENST00000359890
14
ENSE00001432222
chr14:
23371092-23371023
70
RBM23_HUMAN
416-439
24
0
-
-
1.15
ENST00000359890
15
ENSE00001413847
chr14:
23370942-23369855
1088
RBM23_HUMAN
439-439
1
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2cq4a1 (A:132-232)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
RNA binding protein 23
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2cq4a1
A:132-232
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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