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2CQ2
Asym. Unit
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Asym.Unit (578 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN HYPOTHETICAL PROTEIN LOC91801
Authors
:
K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
19 May 05 (Deposition) - 19 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rrm Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of Rna Binding Domain In Hypothetical Protein Loc91801
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(4, 4)
Info
All Exons
Exon 1.6 (A:18-43 (gaps))
Exon 1.7 (A:44-123)
Exon 1.8a (A:123-127 (gaps))
Exon 1.9 (A:128-131)
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1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8a
4: Boundary 1.8a/1.9
5: Boundary 1.9/1.10b
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000389568
2
ENSE00001724312
chr11:
107436244-107436179
66
ALKB8_HUMAN
-
0
0
-
-
1.3
ENST00000389568
3
ENSE00001620533
chr11:
107435940-107435888
53
ALKB8_HUMAN
-
0
0
-
-
1.4
ENST00000389568
4
ENSE00001769102
chr11:
107434462-107434273
190
ALKB8_HUMAN
-
0
0
-
-
1.5
ENST00000389568
5
ENSE00001727109
chr11:
107433542-107433425
118
ALKB8_HUMAN
-
0
0
-
-
1.6
ENST00000389568
6
ENSE00002152837
chr11:
107431625-107431491
135
ALKB8_HUMAN
1-43
43
1
A:18-43 (gaps)
42
1.7
ENST00000389568
7
ENSE00000990040
chr11:
107427729-107427492
238
ALKB8_HUMAN
44-123
80
1
A:44-123
80
1.8a
ENST00000389568
8a
ENSE00000930433
chr11:
107424704-107424573
132
ALKB8_HUMAN
123-167
45
1
A:123-127 (gaps)
14
1.9
ENST00000389568
9
ENSE00000930432
chr11:
107423929-107423834
96
ALKB8_HUMAN
167-199
33
1
A:128-131
4
1.10b
ENST00000389568
10b
ENSE00000930431
chr11:
107422638-107422534
105
ALKB8_HUMAN
199-234
36
0
-
-
1.11
ENST00000389568
11
ENSE00001506233
chr11:
107420549-107420479
71
ALKB8_HUMAN
234-257
24
0
-
-
1.12b
ENST00000389568
12b
ENSE00001687648
chr11:
107403132-107403026
107
ALKB8_HUMAN
258-293
36
0
-
-
1.13
ENST00000389568
13
ENSE00001697189
chr11:
107396318-107396167
152
ALKB8_HUMAN
293-344
52
0
-
-
1.14
ENST00000389568
14
ENSE00001611673
chr11:
107393281-107393025
257
ALKB8_HUMAN
344-429
86
0
-
-
1.15
ENST00000389568
15
ENSE00001634419
chr11:
107381762-107381613
150
ALKB8_HUMAN
430-479
50
0
-
-
1.16c
ENST00000389568
16c
ENSE00001763825
chr11:
107375941-107375321
621
ALKB8_HUMAN
480-664
185
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2cq2a1 (A:25-125)
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Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Alkylation repair AlkB homolog 8, ALKBH8
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2cq2a1
A:25-125
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (578 KB)
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