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2CPZ
Asym. Unit
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Asym.Unit (575 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RNA BINDING DOMAIN 3 IN CUG TRIPLET REPEAT RNA-BINDING PROTEIN 1
Authors
:
K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
19 May 05 (Deposition) - 19 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rrm Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription
(Keyword Search:
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Reference
:
K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of Rna Binding Domain 3 In Cug Triplet Repeat Rna-Binding Protein 1
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (-|-|A:401-479)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
CELF1_HUMAN
16-99
108-188
401-479
1
-
-
A:401-479
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Exons
(5, 5)
Info
All Exons
Exon 1.17b (A:376-376)
Exon 1.18b (A:376-378)
Exon 1.19b (A:379-397 (gaps))
Exon 1.20 (A:397-445)
Exon 1.21a (A:445-488)
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All Exon Boundaries
1: Boundary 1.16a/1.17b
2: Boundary 1.17b/1.18b
3: Boundary 1.18b/1.19b
4: Boundary 1.19b/1.20
5: Boundary 1.20/1.21a
6: Boundary 1.21a/1.23a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.10d
ENST00000358597
10d
ENSE00001601316
chr11:
47510576-47510389
188
CELF1_HUMAN
1-60
60
0
-
-
1.11
ENST00000358597
11
ENSE00002154815
chr11:
47508793-47508711
83
CELF1_HUMAN
60-87
28
0
-
-
1.12b
ENST00000358597
12b
ENSE00001704133
chr11:
47508350-47508302
49
CELF1_HUMAN
88-104
17
0
-
-
1.13a
ENST00000358597
13a
ENSE00001658663
chr11:
47506075-47505941
135
CELF1_HUMAN
104-149
46
0
-
-
1.14a
ENST00000358597
14a
ENSE00001624279
chr11:
47505084-47505005
80
CELF1_HUMAN
149-175
27
0
-
-
1.15a
ENST00000358597
15a
ENSE00001271006
chr11:
47504408-47504247
162
CELF1_HUMAN
176-229
54
0
-
-
1.16a
ENST00000358597
16a
ENSE00001404953
chr11:
47500504-47500429
76
CELF1_HUMAN
230-255
26
0
-
-
1.17b
ENST00000358597
17b
ENSE00001098102
chr11:
47498977-47498849
129
CELF1_HUMAN
255-298
44
1
A:376-376
1
1.18b
ENST00000358597
18b
ENSE00001098106
chr11:
47498508-47498398
111
CELF1_HUMAN
298-335
38
1
A:376-378
3
1.19b
ENST00000358597
19b
ENSE00001098105
chr11:
47497073-47496888
186
CELF1_HUMAN
335-397
63
1
A:379-397 (gaps)
54
1.20
ENST00000358597
20
ENSE00001098104
chr11:
47494783-47494640
144
CELF1_HUMAN
397-445
49
1
A:397-445
49
1.21a
ENST00000358597
21a
ENSE00001271057
chr11:
47493909-47493743
167
CELF1_HUMAN
445-486
42
1
A:445-488
44
1.23a
ENST00000358597
23a
ENSE00001270964
chr11:
47490443-47489946
498
CELF1_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2cpza1 (A:383-484)
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
CUG triplet repeat RNA-binding protein 1
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2cpza1
A:383-484
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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