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2CPX
Asym. Unit
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Asym.Unit (621 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN HYPOTHETICAL PROTEIN FLJ11016
Authors
:
K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
19 May 05 (Deposition) - 19 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rrm Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of Rna Binding Domain In Hypothetical Protein Flj11016
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_028897 (Y376Y, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_028897
H
376
Y
RBM41_HUMAN
Polymorphism
17850127
A
Y
376
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (A:309-387)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
RBM41_HUMAN
309-387
1
A:309-387
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Exons
(3, 3)
Info
All Exons
Exon 1.8c (A:284-309 (gaps))
Exon 1.9d (A:310-359)
Exon 1.10b (A:359-398 (gaps))
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All Exon Boundaries
1: Boundary 1.5a/1.8c
2: Boundary 1.8c/1.9d
3: Boundary 1.9d/1.10b
4: Boundary 1.10b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000372479
1b
ENSE00001092587
X:106362034-106361996
39
RBM41_HUMAN
1-3
3
0
-
-
1.2b
ENST00000372479
2b
ENSE00000866531
X:106359996-106359880
117
RBM41_HUMAN
3-42
40
0
-
-
1.4
ENST00000372479
4
ENSE00000866529
X:106359284-106359092
193
RBM41_HUMAN
42-106
65
0
-
-
1.5a
ENST00000372479
5a
ENSE00000866528
X:106358786-106358582
205
RBM41_HUMAN
107-175
69
0
-
-
1.8c
ENST00000372479
8c
ENSE00000674313
X:106332069-106331666
404
RBM41_HUMAN
175-309
135
1
A:284-309 (gaps)
85
1.9d
ENST00000372479
9d
ENSE00001212903
X:106312632-106312485
148
RBM41_HUMAN
310-359
50
1
A:310-359
50
1.10b
ENST00000372479
10b
ENSE00001457910
X:106310923-106310368
556
RBM41_HUMAN
359-413
55
1
A:359-398 (gaps)
54
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2cpxa1 (A:291-392)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
RNA-binding protein 41, RBM41
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2cpxa1
A:291-392
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
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