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2CPR
Asym. Unit
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Asym.Unit (661 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE HRDC DOMAIN OF HUMAN EXOSOME COMPONENT 10
Authors
:
T. Nagata, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
19 May 05 (Deposition) - 19 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Hrdc, Helix-Bundle, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nagata, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Hrdc Domain Of Human Exosome Component 10
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HRDC (A:503-583)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HRDC
PS50967
HRDC domain profile.
EXOSX_HUMAN
503-583
1
A:503-583
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Exons
(7, 7)
Info
All Exons
Exon 1.13a (A:476-482 (gaps))
Exon 1.14a (A:483-529)
Exon 1.14d (A:529-546)
Exon 1.15b (A:546-583)
Exon 1.16a (A:584-594)
Exon 1.16c (A:595-599 (gaps))
Exon 1.16f (A:599-599)
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All Exon Boundaries
1: Boundary 1.11/1.13a
2: Boundary 1.13a/1.14a
3: Boundary 1.14a/1.14d
4: Boundary 1.14d/1.15b
5: Boundary 1.15b/1.16a
6: Boundary 1.16a/1.16c
7: Boundary 1.16c/1.16f
8: Boundary 1.16f/1.17b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000376936
1a
ENSE00001472163
chr1:
11159938-11159778
161
EXOSX_HUMAN
1-37
37
0
-
-
1.2
ENST00000376936
2
ENSE00001168316
chr1:
11158213-11158077
137
EXOSX_HUMAN
38-83
46
0
-
-
1.3
ENST00000376936
3
ENSE00001168308
chr1:
11155938-11155815
124
EXOSX_HUMAN
83-124
42
0
-
-
1.5b
ENST00000376936
5b
ENSE00001168299
chr1:
11151654-11151550
105
EXOSX_HUMAN
125-159
35
0
-
-
1.6
ENST00000376936
6
ENSE00001168288
chr1:
11151236-11151071
166
EXOSX_HUMAN
160-215
56
0
-
-
1.7
ENST00000376936
7
ENSE00001168279
chr1:
11150725-11150611
115
EXOSX_HUMAN
215-253
39
0
-
-
1.8
ENST00000376936
8
ENSE00001168272
chr1:
11148255-11148180
76
EXOSX_HUMAN
253-278
26
0
-
-
1.9
ENST00000376936
9
ENSE00001168264
chr1:
11147967-11147857
111
EXOSX_HUMAN
279-315
37
0
-
-
1.10
ENST00000376936
10
ENSE00001168258
chr1:
11147648-11147505
144
EXOSX_HUMAN
316-363
48
0
-
-
1.11
ENST00000376936
11
ENSE00001168251
chr1:
11142935-11142745
191
EXOSX_HUMAN
364-427
64
0
-
-
1.13a
ENST00000376936
13a
ENSE00001168241
chr1:
11141295-11141139
157
EXOSX_HUMAN
427-479
53
1
A:476-482 (gaps)
16
1.14a
ENST00000376936
14a
ENSE00001168235
chr1:
11140969-11140821
149
EXOSX_HUMAN
480-529
50
1
A:483-529
47
1.14d
ENST00000376936
14d
ENSE00001168225
chr1:
11140606-11140556
51
EXOSX_HUMAN
529-546
18
1
A:529-546
18
1.15b
ENST00000376936
15b
ENSE00001168218
chr1:
11139879-11139768
112
EXOSX_HUMAN
546-583
38
1
A:546-583
38
1.16a
ENST00000376936
16a
ENSE00001168210
chr1:
11137708-11137658
51
EXOSX_HUMAN
584-600
17
1
A:584-594
11
1.16c
ENST00000376936
16c
ENSE00001168203
chr1:
11137500-11137422
79
EXOSX_HUMAN
601-627
27
1
A:595-599 (gaps)
20
1.16f
ENST00000376936
16f
ENSE00001168196
chr1:
11137005-11136899
107
EXOSX_HUMAN
627-662
36
1
A:599-599
1
1.17b
ENST00000376936
17b
ENSE00001168190
chr1:
11134383-11134288
96
EXOSX_HUMAN
663-694
32
0
-
-
1.18
ENST00000376936
18
ENSE00001168157
chr1:
11134065-11133991
75
EXOSX_HUMAN
695-719
25
0
-
-
1.19c
ENST00000376936
19c
ENSE00001168184
chr1:
11132228-11132144
85
EXOSX_HUMAN
720-748
29
0
-
-
1.19e
ENST00000376936
19e
ENSE00001168178
chr1:
11131030-11130957
74
EXOSX_HUMAN
748-772
25
0
-
-
1.20
ENST00000376936
20
ENSE00001168173
chr1:
11129787-11129616
172
EXOSX_HUMAN
773-830
58
0
-
-
1.21c
ENST00000376936
21c
ENSE00001168168
chr1:
11128763-11128702
62
EXOSX_HUMAN
830-850
21
0
-
-
1.22
ENST00000376936
22
ENSE00001168163
chr1:
11128141-11128065
77
EXOSX_HUMAN
851-876
26
0
-
-
1.23c
ENST00000376936
23c
ENSE00001918071
chr1:
11126805-11126675
131
EXOSX_HUMAN
876-885
10
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2cpra1 (A:483-595)
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Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
HRDC-like
(16)
Family
:
EXOSC10 HRDC domain-like
(5)
Protein domain
:
Exosome component 10, EXOSC10
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2cpra1
A:483-595
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Chain A
Asymmetric Unit 1
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