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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF OF HUMAN APOBEC-1 COMPLEMENTATION FACTOR, ACF
Authors
:
T. Nagata, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
19 May 05 (Deposition) - 19 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rna Recognition Motif, Rrm, Rnp, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nagata, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Rna Recognition Motif Of Human Apobec-1 Complementation Factor, Acf
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
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1: RRM (-|A:231-303|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
A1CF_HUMAN
56-134
231-303
136-218
1
-
A:231-303
-
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Exons
(4, 4)
Info
All Exons
Exon 1.9 (A:216-222 (gaps))
Exon 1.11 (A:222-257 (gaps))
Exon 1.12 (A:257-289)
Exon 1.13 (A:290-314 (gaps))
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1: Boundary 1.8/1.9
2: Boundary 1.9/1.11
3: Boundary 1.11/1.12
4: Boundary 1.12/1.13
5: Boundary 1.13/1.14a
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4
ENST00000373993
4
ENSE00002184869
chr10:
52619745-52619602
144
A1CF_HUMAN
1-33
33
0
-
-
1.7
ENST00000373993
7
ENSE00000986000
chr10:
52603882-52603748
135
A1CF_HUMAN
34-78
45
0
-
-
1.8
ENST00000373993
8
ENSE00000986001
chr10:
52601752-52601622
131
A1CF_HUMAN
79-122
44
0
-
-
1.9
ENST00000373993
9
ENSE00002188458
chr10:
52596072-52595834
239
A1CF_HUMAN
122-202
81
1
A:216-222 (gaps)
32
1.11
ENST00000373993
11
ENSE00000986003
chr10:
52588055-52587891
165
A1CF_HUMAN
202-257
56
1
A:222-257 (gaps)
56
1.12
ENST00000373993
12
ENSE00000986004
chr10:
52580409-52580312
98
A1CF_HUMAN
257-289
33
1
A:257-289
33
1.13
ENST00000373993
13
ENSE00001093116
chr10:
52576039-52575766
274
A1CF_HUMAN
290-381
92
1
A:290-314 (gaps)
54
1.14a
ENST00000373993
14a
ENSE00001093114
chr10:
52573822-52573617
206
A1CF_HUMAN
381-449
69
0
-
-
1.15b
ENST00000373993
15b
ENSE00001093113
chr10:
52570936-52570800
137
A1CF_HUMAN
450-495
46
0
-
-
1.16
ENST00000373993
16
ENSE00001142847
chr10:
52569802-52569654
149
A1CF_HUMAN
495-545
51
0
-
-
1.17b
ENST00000373993
17b
ENSE00001462112
chr10:
52566640-52566322
319
A1CF_HUMAN
545-594
50
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2cpda1 (A:223-308)
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Protein Domains
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Organisms
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)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
APOBEC1 stimulating protein
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2cpda1
A:223-308
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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