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2COG
Asym. Unit
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Asym.Unit (128 KB)
Biol.Unit 1 (123 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF OXIDIZED HUMAN CYTOSOLIC BRANCHED-CHAIN AMINOTRANSFERASE COMPLEXED WITH 4-METHYLVALERATE
Authors
:
M. Goto
Date
:
17 May 05 (Deposition) - 30 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Plp-Dependent Enzyme, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Goto, I. Miyahara, K. Hirotsu, M. Conway, N. Yennawar, M. M. Islam, S. M. Hutson
Structural Determinants For Branched-Chain Aminotransferase Isozyme-Specific Inhibition By The Anticonvulsant Drug Gabapentin
J. Biol. Chem. V. 280 37246 2005
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 4-METHYL VALERIC ACID (4MVa)
1b: 4-METHYL VALERIC ACID (4MVb)
2a: MAGNESIUM ION (MGa)
3a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4MV
2
Ligand/Ion
4-METHYL VALERIC ACID
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:133 , GLU B:274 , HOH B:453 , HOH B:454 , HOH B:578
BINDING SITE FOR RESIDUE MG B 430
2
AC2
SOFTWARE
ARG A:119 , ARG A:212 , LYS A:222 , TYR A:227 , GLU A:257 , THR A:260 , ASN A:262 , LEU A:286 , GLY A:288 , VAL A:289 , THR A:290 , THR A:333 , HOH A:443 , HOH A:459
BINDING SITE FOR RESIDUE PLP A 410
3
AC3
SOFTWARE
ARG B:119 , ARG B:212 , LYS B:222 , TYR B:227 , GLU B:257 , THR B:260 , ASN B:262 , LEU B:286 , GLY B:288 , VAL B:289 , THR B:290 , THR B:333 , HOH B:434 , HOH B:445 , HOH B:483
BINDING SITE FOR RESIDUE PLP B 410
4
AC4
SOFTWARE
ARG A:163 , TYR A:193 , THR A:260 , MET A:261 , THR A:333 , ALA A:334 , TYR B:90
BINDING SITE FOR RESIDUE 4MV A 420
5
AC5
SOFTWARE
TYR A:90 , VAL A:175 , TYR B:193 , THR B:260 , MET B:261 , GLY B:332 , THR B:333 , ALA B:334 , HOH B:521
BINDING SITE FOR RESIDUE 4MV B 420
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_047681 (T59M, chain A/B, )
2: VAR_019614 (E321K, chain A/B, )
3: VAR_047682 (G330S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047681
T
59
M
BCAT1_HUMAN
Polymorphism
17374285
A/B
T
59
M
2
UniProt
VAR_019614
E
321
K
BCAT1_HUMAN
Polymorphism
7313020
A/B
E
321
K
3
UniProt
VAR_047682
G
330
S
BCAT1_HUMAN
Polymorphism
1057204
A/B
G
330
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_4 (A:257-291,B:257-291)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_4
PS00770
Aminotransferases class-IV signature.
BCAT1_HUMAN
257-291
2
A:257-291
B:257-291
[
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Exons
(10, 20)
Info
All Exons
Exon 1.2 (A:22-26 | B:24-26)
Exon 1.4 (A:27-93 (gaps) | B:27-93)
Exon 1.5 (A:94-130 | B:94-130)
Exon 1.6 (A:131-170 | B:131-170)
Exon 1.7 (A:171-225 (gaps) | B:171-225 (gaps...)
Exon 1.8 (A:225-273 | B:225-273)
Exon 1.9 (A:273-301 | B:273-301)
Exon 1.10 (A:302-348 | B:302-348)
Exon 1.11 (A:349-373 | B:349-373)
Exon 1.12 (A:374-385 | B:374-385)
View:
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All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000261192
1
ENSE00001535251
chr12:
25102308-25101861
448
BCAT1_HUMAN
1-2
2
0
-
-
1.2
ENST00000261192
2
ENSE00001306384
chr12:
25054819-25054748
72
BCAT1_HUMAN
3-26
24
2
A:22-26
B:24-26
5
3
1.4
ENST00000261192
4
ENSE00000465783
chr12:
25047409-25047209
201
BCAT1_HUMAN
27-93
67
2
A:27-93 (gaps)
B:27-93
67
67
1.5
ENST00000261192
5
ENSE00001290230
chr12:
25034345-25034235
111
BCAT1_HUMAN
94-130
37
2
A:94-130
B:94-130
37
37
1.6
ENST00000261192
6
ENSE00000797209
chr12:
25031583-25031464
120
BCAT1_HUMAN
131-170
40
2
A:131-170
B:131-170
40
40
1.7
ENST00000261192
7
ENSE00000730302
chr12:
25002883-25002720
164
BCAT1_HUMAN
171-225
55
2
A:171-225 (gaps)
B:171-225 (gaps)
55
55
1.8
ENST00000261192
8
ENSE00000730341
chr12:
24995158-24995016
143
BCAT1_HUMAN
225-273
49
2
A:225-273
B:225-273
49
49
1.9
ENST00000261192
9
ENSE00000730344
chr12:
24989530-24989445
86
BCAT1_HUMAN
273-301
29
2
A:273-301
B:273-301
29
29
1.10
ENST00000261192
10
ENSE00001314201
chr12:
24985797-24985657
141
BCAT1_HUMAN
302-348
47
2
A:302-348
B:302-348
47
47
1.11
ENST00000261192
11
ENSE00001292534
chr12:
24982831-24982757
75
BCAT1_HUMAN
349-373
25
2
A:349-373
B:349-373
25
25
1.12
ENST00000261192
12
ENSE00001318494
chr12:
24970983-24964281
6703
BCAT1_HUMAN
374-386
13
2
A:374-385
B:374-385
12
12
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2coga_ (A:)
1b: SCOP_d2cogb_ (B:)
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Classes
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)
(
)
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(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Superfamily
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Family
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(33)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2coga_
A:
1b
d2cogb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2cogB01 (B:24-194,B:374-385)
1b: CATH_2cogA01 (A:22-193,A:374-385)
2a: CATH_2cogA02 (A:199-373)
2b: CATH_2cogB02 (B:199-373)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
[code=3.30.470.10, no name defined]
(39)
Human (Homo sapiens)
(15)
1a
2cogB01
B:24-194,B:374-385
1b
2cogA01
A:22-193,A:374-385
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 2
(39)
Homologous Superfamily
:
D-amino Acid Aminotransferase, subunit A, domain 2
(39)
Human (Homo sapiens)
(15)
2a
2cogA02
A:199-373
2b
2cogB02
B:199-373
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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