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2COE
Asym. Unit
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Asym.Unit (611 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF BRCT DOMAIN OF TERMINAL DEOXYNUCLEOTIDYLTRANSFERASE
Authors
:
T. Nagashima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
17 May 05 (Deposition) - 17 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Brct Domain, Dna Polymerase, Teminal Deoxynucleotidyltransferase, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nagashima, F. Hayashi, S. Yokoyama
Solution Structure Of Brct Domain Of Terminal Deoxynucleotidyltransferase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_058200 (G101G, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_058200
R
112
G
TDT_HUMAN
Polymorphism
6584066
A
G
101
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BRCT (A:16-113)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BRCT
PS50172
BRCT domain profile.
TDT_HUMAN
27-124
1
A:16-113
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Exons
(3, 3)
Info
All Exons
Exon 1.1b (A:1-57 (gaps))
Exon 1.2 (A:57-115)
Exon 1.3 (A:116-120)
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All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000371174
1b
ENSE00001826240
chr10:
98064153-98064457
305
TDT_HUMAN
1-68
68
1
A:1-57 (gaps)
64
1.2
ENST00000371174
2
ENSE00000717360
chr10:
98078109-98078283
175
TDT_HUMAN
68-126
59
1
A:57-115
59
1.3
ENST00000371174
3
ENSE00000717371
chr10:
98079019-98079147
129
TDT_HUMAN
127-169
43
1
A:116-120
5
1.4
ENST00000371174
4
ENSE00000717393
chr10:
98080375-98080545
171
TDT_HUMAN
170-226
57
0
-
-
1.5
ENST00000371174
5
ENSE00000717410
chr10:
98082414-98082485
72
TDT_HUMAN
227-250
24
0
-
-
1.6
ENST00000371174
6
ENSE00000717425
chr10:
98084023-98084146
124
TDT_HUMAN
251-292
42
0
-
-
1.7
ENST00000371174
7
ENSE00000717478
chr10:
98087225-98087357
133
TDT_HUMAN
292-336
45
0
-
-
1.8
ENST00000371174
8
ENSE00000717489
chr10:
98088482-98088587
106
TDT_HUMAN
336-371
36
0
-
-
1.9
ENST00000371174
9
ENSE00000717504
chr10:
98092108-98092353
246
TDT_HUMAN
372-453
82
0
-
-
1.10a
ENST00000371174
10a
ENSE00000811044
chr10:
98095648-98095731
84
TDT_HUMAN
454-481
28
0
-
-
1.11b
ENST00000371174
11b
ENSE00001856643
chr10:
98097895-98098321
427
TDT_HUMAN
482-509
28
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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