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2CO8
Asym. Unit
Info
Asym.Unit (394 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURES OF THE LIM DOMAIN OF HUMAN NEDD9 INTERACTING PROTEIN WITH CALPONIN HOMOLOGY AND LIM DOMAINS
Authors
:
M. Sato, T. Tomizawa, K. Saito, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
17 May 05 (Deposition) - 17 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Lim Domain, Zinc Finger Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sato, T. Tomizawa, K. Saito, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structures Of The Lim Domain Of Human Nedd9 Interacting Protein With Calponin Homology And Lim Domains
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:18 , LEU A:20 , CYS A:21 , HIS A:39 , CYS A:42
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:45 , CYS A:48 , CYS A:68 , HIS A:71
BINDING SITE FOR RESIDUE ZN A 401
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_067066 (G1T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067066
A
624
T
MICA1_HUMAN
Polymorphism
17850590
A
G
1
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_2 (A:16-76)
2: LIM_DOMAIN_1 (A:18-52)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_2
PS50023
LIM domain profile.
MICA1_HUMAN
695-757
1
A:16-76
2
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
MICA1_HUMAN
697-731
1
A:18-52
[
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Exons
(4, 4)
Info
All Exons
Exon 1.10h (A:1-7)
Exon 1.10j (A:8-11)
Exon 1.10k (A:12-64)
Exon 1.11a (A:64-81 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.10g/1.10h
2: Boundary 1.10h/1.10i
3: Boundary 1.10i/1.10j
4: Boundary 1.10j/1.10k
5: Boundary 1.10k/1.11a
6: Boundary 1.11a/1.11e
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000358807
1a
ENSE00001346540
chr6:
109777190-109776922
269
MICA1_HUMAN
-
0
0
-
-
1.3
ENST00000358807
3
ENSE00002200739
chr6:
109775442-109775142
301
MICA1_HUMAN
1-86
86
0
-
-
1.4
ENST00000358807
4
ENSE00002147354
chr6:
109775048-109774841
208
MICA1_HUMAN
87-156
70
0
-
-
1.5
ENST00000358807
5
ENSE00002143510
chr6:
109774570-109774466
105
MICA1_HUMAN
156-191
36
0
-
-
1.6a
ENST00000358807
6a
ENSE00002150654
chr6:
109773818-109773714
105
MICA1_HUMAN
191-226
36
0
-
-
1.7b
ENST00000358807
7b
ENSE00002173557
chr6:
109773604-109773449
156
MICA1_HUMAN
226-278
53
0
-
-
1.7e
ENST00000358807
7e
ENSE00002190488
chr6:
109772903-109772803
101
MICA1_HUMAN
278-311
34
0
-
-
1.8
ENST00000358807
8
ENSE00002173562
chr6:
109771760-109771503
258
MICA1_HUMAN
312-397
86
0
-
-
1.9b
ENST00000358807
9b
ENSE00002193439
chr6:
109771288-109771173
116
MICA1_HUMAN
398-436
39
0
-
-
1.10a
ENST00000358807
10a
ENSE00002162670
chr6:
109770986-109770860
127
MICA1_HUMAN
436-478
43
0
-
-
1.10c
ENST00000358807
10c
ENSE00002165722
chr6:
109770684-109770603
82
MICA1_HUMAN
479-506
28
0
-
-
1.10e
ENST00000358807
10e
ENSE00002195022
chr6:
109770082-109769935
148
MICA1_HUMAN
506-555
50
0
-
-
1.10g
ENST00000358807
10g
ENSE00002198253
chr6:
109769596-109769406
191
MICA1_HUMAN
555-619
65
0
-
-
1.10h
ENST00000358807
10h
ENSE00002167337
chr6:
109769166-109769078
89
MICA1_HUMAN
619-648
30
1
A:1-7
7
1.10i
ENST00000358807
10i
ENSE00002171488
chr6:
109768925-109768884
42
MICA1_HUMAN
649-662
14
0
-
-
1.10j
ENST00000358807
10j
ENSE00002176586
chr6:
109768643-109768560
84
MICA1_HUMAN
663-690
28
1
A:8-11
4
1.10k
ENST00000358807
10k
ENSE00002160425
chr6:
109768432-109768276
157
MICA1_HUMAN
691-743
53
1
A:12-64
53
1.11a
ENST00000358807
11a
ENSE00002166224
chr6:
109767975-109767899
77
MICA1_HUMAN
743-768
26
1
A:64-81 (gaps)
25
1.11e
ENST00000358807
11e
ENSE00002199952
chr6:
109767615-109767339
277
MICA1_HUMAN
769-861
93
0
-
-
1.12
ENST00000358807
12
ENSE00002160349
chr6:
109767065-109766974
92
MICA1_HUMAN
861-891
31
0
-
-
1.13
ENST00000358807
13
ENSE00002201707
chr6:
109766732-109766619
114
MICA1_HUMAN
892-929
38
0
-
-
1.14
ENST00000358807
14
ENSE00002149641
chr6:
109766493-109766400
94
MICA1_HUMAN
930-961
32
0
-
-
1.15
ENST00000358807
15
ENSE00002147191
chr6:
109766198-109766099
100
MICA1_HUMAN
961-994
34
0
-
-
1.16
ENST00000358807
16
ENSE00002173143
chr6:
109766001-109765928
74
MICA1_HUMAN
994-1019
26
0
-
-
1.17b
ENST00000358807
17b
ENSE00002190737
chr6:
109765542-109765265
278
MICA1_HUMAN
1019-1067
49
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2co8a1 (A:44-76)
1b: SCOP_d2co8a2 (A:8-43)
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(
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Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
LIM domain
(37)
Protein domain
:
Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2co8a1
A:44-76
1b
d2co8a2
A:8-43
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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