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2CNB
Biol. Unit 2
Info
Asym.Unit (254 KB)
Biol.Unit 1 (126 KB)
Biol.Unit 2 (126 KB)
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(1)
Title
:
TRYPANOSOMA BRUCEI UDP-GALACTOSE-4-EPIMERASE IN TERNARY COMPLEX WITH NAD AND THE SUBSTRATE ANALOGUE UDP-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE
Authors
:
M. S. Alphey, M. A. J. Ferguson, W. N. Hunter
Date
:
18 May 06 (Deposition) - 12 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Epimerase, Short-Chain Dehydrogenase/Reductase, Udp-Galactose-4- Epimerase, Nad, Isomerase, Trypanosoma Brucei, Udp-4-Deoxy- 4-Fluoro-Alpha-D-Galactose
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Reference
:
M. S. Alphey, A. Burton, M. Urbaniak, G. J. Boons, M. A. J. Ferguson, W. N. Hunter
Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary Complex With Nad+ And The Substrate Analogue Udp-4-Deoxy-4-Fluoro-Alpha-D-Galactose
Acta Crystallogr. , Sect. F V. 62 829 2006
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
1c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
1d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
2a: URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-F... (UFGa)
2b: URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-F... (UFGb)
2c: URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-F... (UFGc)
2d: URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-F... (UFGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
UFG
2
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE
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Sites
(4, 4)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
LEU C:102 , VAL C:104 , SER C:142 , TYR C:173 , TYR C:200 , PHE C:201 , ASN C:202 , THR C:220 , HIS C:221 , LEU C:222 , MET C:252 , PRO C:253 , ILE C:254 , PHE C:255 , CYS C:266 , ARG C:268 , VAL C:312 , ARG C:335 , ASP C:338 , LEU C:342 , NAD C:1383 , HOH C:2073 , HOH C:2085 , HOH C:2113 , HOH C:2114
BINDING SITE FOR RESIDUE UFG C1382
2
AC6
SOFTWARE
GLY C:7 , GLY C:10 , TYR C:11 , ILE C:12 , ASP C:32 , SER C:33 , LEU C:34 , VAL C:35 , GLY C:36 , THR C:37 , GLY C:74 , ASP C:75 , VAL C:76 , MET C:98 , CYS C:99 , ALA C:100 , LEU C:102 , ASN C:117 , SER C:140 , SER C:141 , TYR C:173 , LYS C:177 , TYR C:200 , PHE C:201 , ALA C:203 , UFG C:1382 , HOH C:2003 , HOH C:2059 , HOH C:2116 , HOH C:2117 , HOH C:2118
BINDING SITE FOR RESIDUE NAD C1383
3
AC7
SOFTWARE
LEU D:102 , VAL D:104 , SER D:142 , ALA D:143 , TYR D:173 , TYR D:200 , PHE D:201 , ASN D:202 , THR D:220 , HIS D:221 , LEU D:222 , ILE D:225 , MET D:252 , PRO D:253 , ILE D:254 , PHE D:255 , CYS D:266 , ARG D:268 , VAL D:312 , ARG D:335 , ASP D:338 , LEU D:342 , NAD D:1383 , HOH D:2049 , HOH D:2091
BINDING SITE FOR RESIDUE UFG D1382
4
AC8
SOFTWARE
GLY D:7 , GLY D:10 , TYR D:11 , ILE D:12 , ASP D:32 , SER D:33 , LEU D:34 , VAL D:35 , GLY D:36 , THR D:37 , GLY D:74 , ASP D:75 , VAL D:76 , MET D:98 , CYS D:99 , ALA D:100 , LEU D:102 , ASN D:117 , SER D:140 , SER D:141 , TYR D:173 , LYS D:177 , TYR D:200 , PHE D:201 , ALA D:203 , UFG D:1382 , HOH D:2092 , HOH D:2093 , HOH D:2094
BINDING SITE FOR RESIDUE NAD D1383
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2cnba_ (A:)
1b: SCOP_d2cnbb_ (B:)
1c: SCOP_d2cnbc_ (C:)
1d: SCOP_d2cnbd_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
automated matches
(114)
Trypanosome (Trypanosoma brucei) [TaxId: 5691]
(1)
1a
d2cnba_
A:
1b
d2cnbb_
B:
1c
d2cnbc_
C:
1d
d2cnbd_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2cnbB01 (B:1-204,B:269-305)
1b: CATH_2cnbC01 (C:1-204,C:269-305)
1c: CATH_2cnbA01 (A:1-204,A:269-305)
1d: CATH_2cnbD01 (D:1-204,D:269-305)
2a: CATH_2cnbB02 (B:205-268,B:306-379)
2b: CATH_2cnbD02 (D:205-268,D:306-379)
2c: CATH_2cnbA02 (A:205-268,A:306-379)
2d: CATH_2cnbC02 (C:205-268,C:306-379)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Trypanosoma brucei. Organism_taxid: 5691.
(2)
1a
2cnbB01
B:1-204,B:269-305
1b
2cnbC01
C:1-204,C:269-305
1c
2cnbA01
A:1-204,A:269-305
1d
2cnbD01
D:1-204,D:269-305
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
UDP-galactose 4-epimerase; domain 1
(99)
Homologous Superfamily
:
UDP-galactose 4-epimerase, domain 1
(99)
Trypanosoma brucei. Organism_taxid: 5691.
(2)
2a
2cnbB02
B:205-268,B:306-379
2b
2cnbD02
D:205-268,D:306-379
2c
2cnbA02
A:205-268,A:306-379
2d
2cnbC02
C:205-268,C:306-379
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (254 KB)
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