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2CNB
Biol. Unit 1
Info
Asym.Unit (254 KB)
Biol.Unit 1 (126 KB)
Biol.Unit 2 (126 KB)
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(1)
Title
:
TRYPANOSOMA BRUCEI UDP-GALACTOSE-4-EPIMERASE IN TERNARY COMPLEX WITH NAD AND THE SUBSTRATE ANALOGUE UDP-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE
Authors
:
M. S. Alphey, M. A. J. Ferguson, W. N. Hunter
Date
:
18 May 06 (Deposition) - 12 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Epimerase, Short-Chain Dehydrogenase/Reductase, Udp-Galactose-4- Epimerase, Nad, Isomerase, Trypanosoma Brucei, Udp-4-Deoxy- 4-Fluoro-Alpha-D-Galactose
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Reference
:
M. S. Alphey, A. Burton, M. Urbaniak, G. J. Boons, M. A. J. Ferguson, W. N. Hunter
Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary Complex With Nad+ And The Substrate Analogue Udp-4-Deoxy-4-Fluoro-Alpha-D-Galactose
Acta Crystallogr. , Sect. F V. 62 829 2006
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
1c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
1d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
2a: URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-F... (UFGa)
2b: URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-F... (UFGb)
2c: URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-F... (UFGc)
2d: URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-F... (UFGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
UFG
2
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:102 , SER A:142 , ALA A:143 , TYR A:173 , TYR A:200 , PHE A:201 , ASN A:202 , THR A:220 , HIS A:221 , LEU A:222 , ILE A:225 , MET A:252 , PRO A:253 , ILE A:254 , PHE A:255 , CYS A:266 , ARG A:268 , VAL A:312 , ARG A:335 , ASP A:338 , LEU A:342 , NAD A:1383 , HOH A:2098 , HOH A:2099 , HOH A:2100
BINDING SITE FOR RESIDUE UFG A1382
2
AC2
SOFTWARE
GLY A:7 , ALA A:9 , GLY A:10 , TYR A:11 , ILE A:12 , ASP A:32 , SER A:33 , LEU A:34 , VAL A:35 , GLY A:36 , THR A:37 , GLY A:74 , ASP A:75 , VAL A:76 , MET A:98 , CYS A:99 , ALA A:100 , LEU A:102 , ASN A:117 , SER A:140 , SER A:141 , TYR A:173 , LYS A:177 , TYR A:200 , PHE A:201 , ALA A:203 , UFG A:1382 , HOH A:2028 , HOH A:2057 , HOH A:2102 , HOH A:2103
BINDING SITE FOR RESIDUE NAD A1383
3
AC3
SOFTWARE
LEU B:102 , VAL B:104 , SER B:142 , ALA B:143 , TYR B:173 , TYR B:200 , PHE B:201 , ASN B:202 , THR B:220 , HIS B:221 , LEU B:222 , ILE B:225 , MET B:252 , PRO B:253 , ILE B:254 , PHE B:255 , CYS B:266 , ARG B:268 , ARG B:335 , ASP B:338 , LEU B:342 , NAD B:1383 , HOH B:2059 , HOH B:2098 , HOH B:2099
BINDING SITE FOR RESIDUE UFG B1382
4
AC4
SOFTWARE
GLY B:7 , GLY B:10 , TYR B:11 , ILE B:12 , ASP B:32 , SER B:33 , LEU B:34 , VAL B:35 , GLY B:36 , GLY B:74 , ASP B:75 , VAL B:76 , MET B:98 , CYS B:99 , ALA B:100 , LEU B:102 , ASN B:117 , SER B:140 , SER B:141 , TYR B:173 , LYS B:177 , TYR B:200 , PHE B:201 , ALA B:203 , UFG B:1382 , HOH B:2028 , HOH B:2100 , HOH B:2101
BINDING SITE FOR RESIDUE NAD B1383
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2cnba_ (A:)
1b: SCOP_d2cnbb_ (B:)
1c: SCOP_d2cnbc_ (C:)
1d: SCOP_d2cnbd_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
automated matches
(114)
Trypanosome (Trypanosoma brucei) [TaxId: 5691]
(1)
1a
d2cnba_
A:
1b
d2cnbb_
B:
1c
d2cnbc_
C:
1d
d2cnbd_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2cnbB01 (B:1-204,B:269-305)
1b: CATH_2cnbC01 (C:1-204,C:269-305)
1c: CATH_2cnbA01 (A:1-204,A:269-305)
1d: CATH_2cnbD01 (D:1-204,D:269-305)
2a: CATH_2cnbB02 (B:205-268,B:306-379)
2b: CATH_2cnbD02 (D:205-268,D:306-379)
2c: CATH_2cnbA02 (A:205-268,A:306-379)
2d: CATH_2cnbC02 (C:205-268,C:306-379)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Trypanosoma brucei. Organism_taxid: 5691.
(2)
1a
2cnbB01
B:1-204,B:269-305
1b
2cnbC01
C:1-204,C:269-305
1c
2cnbA01
A:1-204,A:269-305
1d
2cnbD01
D:1-204,D:269-305
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
UDP-galactose 4-epimerase; domain 1
(99)
Homologous Superfamily
:
UDP-galactose 4-epimerase, domain 1
(99)
Trypanosoma brucei. Organism_taxid: 5691.
(2)
2a
2cnbB02
B:205-268,B:306-379
2b
2cnbD02
D:205-268,D:306-379
2c
2cnbA02
A:205-268,A:306-379
2d
2cnbC02
C:205-268,C:306-379
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (254 KB)
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