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2CN6
Asym. Unit
Info
Asym.Unit (40 KB)
Biol.Unit 1 (714 KB)
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(1)
Title
:
RECOMBINANT HUMAN H FERRITIN, K86Q AND E107D MUTANT, SOAKED WITH ZN IONS
Authors
:
L. Toussaint, R. R. Crichton, J. P. Declercq
Date
:
18 May 06 (Deposition) - 13 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (24x)
Keywords
:
Oxidoreductase, Iron, Apoferritin, Ferroxidase, Iron Storage, Metal-Binding, Phosphorylation, Di-Iron Non-Heme Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Toussaint, L. Bertrand, L. Hue, R. R. Crichton, J. P. Declercq
High-Resolution X-Ray Structures Of Human Apoferritin H-Chain Mutants Correlated With Their Activity And Metal-Binding Sites.
J. Mol. Biol. V. 365 440 2007
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: GLYCEROL (GOLa)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
ZN
7
Ligand/Ion
ZINC ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:84 , GLN A:86
BINDING SITE FOR RESIDUE ZN A 210
2
AC2
SOFTWARE
ASP A:131
BINDING SITE FOR RESIDUE CA A 211
3
AC3
SOFTWARE
GLU A:27 , GLU A:62 , HIS A:65 , ZN A:213
BINDING SITE FOR RESIDUE ZN A 212
4
AC4
SOFTWARE
GLU A:62 , ASP A:107 , GLN A:141 , ZN A:212
BINDING SITE FOR RESIDUE ZN A 213
5
AC5
SOFTWARE
HIS A:173 , HOH A:2068
BINDING SITE FOR RESIDUE ZN A 214
6
AC6
SOFTWARE
HIS A:60 , GLU A:64 , GLU A:67
BINDING SITE FOR RESIDUE ZN A 215
7
AC7
SOFTWARE
HIS A:118 , CYS A:130 , GLU A:134 , ZN A:220
BINDING SITE FOR RESIDUE ZN A 216
8
AC8
SOFTWARE
CYS A:130 , GLU A:134 , ZN A:216 , HOH A:2069
BINDING SITE FOR RESIDUE ZN A 220
9
AC9
SOFTWARE
LEU A:28 , SER A:31 , TYR A:32 , ARG A:63 , ILE A:85
BINDING SITE FOR RESIDUE GOL A1185
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (A:10-159)
2: FERRITIN_1 (A:61-79)
3: FERRITIN_2 (A:126-146)
;
View:
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
FRIH_HUMAN
11-160
1
A:10-159
2
FERRITIN_1
PS00540
Ferritin iron-binding regions signature 1.
FRIH_HUMAN
62-80
1
A:61-79
3
FERRITIN_2
PS00204
Ferritin iron-binding regions signature 2.
FRIH_HUMAN
127-147
1
A:126-146
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Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:5-37)
Exon 1.3b (A:38-86)
Exon 1.3e (A:87-128)
Exon 1.3l (A:129-176)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3b
3: Boundary 1.3b/1.3e
4: Boundary 1.3e/1.3l
5: Boundary 1.3l/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000273550
1a
ENSE00001408170
chr11:
61735132-61734784
349
FRIH_HUMAN
1-38
38
1
A:5-37
33
1.3b
ENST00000273550
3b
ENSE00001119153
chr11:
61732987-61732841
147
FRIH_HUMAN
39-87
49
1
A:38-86
49
1.3e
ENST00000273550
3e
ENSE00001119152
chr11:
61732584-61732459
126
FRIH_HUMAN
88-129
42
1
A:87-128
42
1.3l
ENST00000273550
3l
ENSE00001430448
chr11:
61732363-61731757
607
FRIH_HUMAN
130-183
54
1
A:129-176
48
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2cn6a_ (A:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
automated matches
(70)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d2cn6a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2cn6A00 (A:5-176)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Human (Homo sapiens)
(16)
1a
2cn6A00
A:5-176
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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