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2CLZ
Biol. Unit 1
Info
Asym.Unit (144 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
MHC CLASS I NATURAL MUTANT H-2KBM8 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND PBM1 PEPTIDE
Authors
:
C. Mazza, N. Auphan-Anezin, A. Guimezanes, G. A. Barrett-Wilt, F. Montero-Julian, A. Roussel, D. F. Hunt, A. M. Schmitt-Verhulst, B. Malissen
Date
:
03 May 06 (Deposition) - 14 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,H,M,P
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: H,M,P (1x)
Keywords
:
Immune Response, Immune System, Immunoglobulin Domain, Glycoprotein, Transmembrane, Alloreactivity, Mhc I, H-2Kbm8, Membrane, Class I Mhc, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
N. Auphan-Anezin, C. Mazza, A. Guimezanes, G. A. Barrett-Wilt, F. Montero-Julian, A. Roussel, D. F. Hunt, B. Malissen, A. M. Schmitt-Verhulst
Distinct Orientation Of The Alloreactive Monoclonal Cd8 T Cell Activation Program By Three Different Peptide/Mhc Complexes.
Eur. J. Immunol. V. 36 1856 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_B2MG_MOUSE_002 (H34Q, chain B, )
2: VAR_B2MG_MOUSE_003 (K44E, chain B, )
3: VAR_B2MG_MOUSE_004 (R81T, chain B, )
4: VAR_B2MG_MOUSE_005 (D85D, chain B, )
5: VAR_B2MG_MOUSE_006 (D85V, chain B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_B2MG_MOUSE_002
*
H
54
Q
B2MG_MOUSE
---
---
B
H
34
Q
2
UniProt
VAR_B2MG_MOUSE_003
*
K
64
E
B2MG_MOUSE
---
---
B
K
44
E
3
UniProt
VAR_B2MG_MOUSE_004
*
R
101
T
B2MG_MOUSE
---
---
B
R
81
T
4
UniProt
VAR_B2MG_MOUSE_005
*
A
105
D
B2MG_MOUSE
---
---
B
D
85
D
5
UniProt
VAR_B2MG_MOUSE_006
*
A
105
V
B2MG_MOUSE
---
---
B
D
85
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:257-263)
2: RRM ()
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_MOUSE
98-104
1
B:78-84
-
HA1B_MOUSE
278-284
1
A:257-263
-
2
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
RBM5_MOUSE
98-178
231-315
1
-
C:7-8
-
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2clzb_ (B:)
1b: SCOP_d2clzp_ (P:)
2a: SCOP_d2clza1 (A:182-274)
2b: SCOP_d2clzh1 (H:182-274)
3a: SCOP_d2clza2 (A:3-180)
3b: SCOP_d2clzh2 (H:3-180)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Mouse (Mus musculus) [TaxId: 10090]
(166)
1a
d2clzb_
B:
1b
d2clzp_
P:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Mouse (Mus musculus) [TaxId: 10090]
(102)
2a
d2clza1
A:182-274
2b
d2clzh1
H:182-274
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Mouse (Mus musculus), H-2DD [TaxId: 10090]
(20)
3a
d2clza2
A:3-180
3b
d2clzh2
H:3-180
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2clzA01 (A:1-181)
1b: CATH_2clzH01 (H:1-181)
2a: CATH_2clzB00 (B:1-99)
2b: CATH_2clzA02 (A:182-274)
2c: CATH_2clzH02 (H:182-274)
2d: CATH_2clzP00 (P:1-99)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Mouse (Mus musculus)
(40)
1a
2clzA01
A:1-181
1b
2clzH01
H:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Mouse (Mus musculus)
(152)
2a
2clzB00
B:1-99
2b
2clzA02
A:182-274
2c
2clzH02
H:182-274
2d
2clzP00
P:1-99
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (144 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
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