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2CLP
Biol. Unit 5
Info
Asym.Unit (555 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (106 KB)
Biol.Unit 3 (106 KB)
Biol.Unit 4 (106 KB)
Biol.Unit 5 (105 KB)
Biol.Unit 6 (107 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN AFLATOXIN B1 ALDEHYDE REDUCTASE MEMBER 3
Authors
:
J. E. Debreczeni, B. D. Marsden, C. Johansson, K. Kavanagh, K. Guo, C. Sm O. Gileadi, A. Turnbull, E. Papagrigoriou, F. Von Delft, A. Edwards, C. Arrowsmith, J. Weigelt, M. Sundstrom, U. Oppermann
Date
:
28 Apr 06 (Deposition) - 12 May 06 (Release) - 04 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K (2x)
Keywords
:
Oxidoreductase, Aldo-Keto Reductase Family 7, Nad, Nadp, Tim Barrel, Ssa Reductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. E. Debreczeni, C. Johansson, K. Kavanagh, A. Turnbull, E. Papagrigoriou, F. Von Delft, A. Edwards, C. Arrowsmith, J. Weigelt, M. Sundstrom, U. Oppermann
Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase Member 3
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
2b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
2c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
2d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
2e: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPe)
2f: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPf)
2g: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPg)
2h: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPh)
2i: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPi)
2j: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPj)
2k: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: BC4 (SOFTWARE)
2: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BC4
SOFTWARE
GLY I:44 , ALA I:45 , MET I:46 , ASP I:73 , TYR I:78 , HIS I:142 , SER I:172 , ASN I:173 , GLN I:198 , PHE I:226 , ASN I:227 , PRO I:228 , LEU I:229 , GLY I:231 , GLY I:232 , THR I:235 , LYS I:237 , TYR I:238 , GLY I:250 , ARG I:251 , THR I:293 , ILE I:315 , GLY I:317 , MET I:318 , SER I:319 , GLN I:323 , GLN I:326 , ASN I:327
BINDING SITE FOR RESIDUE NDP I1361
2
BC5
SOFTWARE
GLY J:44 , ALA J:45 , MET J:46 , ASP J:73 , TYR J:78 , HIS J:142 , SER J:172 , ASN J:173 , GLN J:198 , PHE J:226 , ASN J:227 , PRO J:228 , LEU J:229 , ALA J:230 , GLY J:231 , GLY J:232 , THR J:235 , LYS J:237 , TYR J:238 , GLY J:250 , ARG J:251 , TYR J:261 , THR J:293 , ILE J:315 , GLY J:317 , MET J:318 , SER J:319 , GLN J:323 , GLN J:326 , ASN J:327
BINDING SITE FOR RESIDUE NDP J1361
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_017416 (V167M, chain I/J, )
2: VAR_017417 (D244D, chain I/J, )
3: VAR_017418 (A352A, chain I/J, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_017416
V
138
M
ARK73_HUMAN
Polymorphism
2231198
I/J
V
167
M
2
UniProt
VAR_017417
N
215
D
ARK73_HUMAN
Polymorphism
1738023
I/J
D
244
D
3
UniProt
VAR_017418
T
323
A
ARK73_HUMAN
Polymorphism
1738025
I/J
A
352
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 11)
Info
All SCOP Domains
1a: SCOP_d2clpa_ (A:)
1b: SCOP_d2clpb_ (B:)
1c: SCOP_d2clpc_ (C:)
1d: SCOP_d2clpd_ (D:)
1e: SCOP_d2clpe_ (E:)
1f: SCOP_d2clpf_ (F:)
1g: SCOP_d2clpg_ (G:)
1h: SCOP_d2clph_ (H:)
1i: SCOP_d2clpi_ (I:)
1j: SCOP_d2clpj_ (J:)
1k: SCOP_d2clpk_ (K:)
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)
(
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)
(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
automated matches
(62)
Human (Homo sapiens) [TaxId: 9606]
(48)
1a
d2clpa_
A:
1b
d2clpb_
B:
1c
d2clpc_
C:
1d
d2clpd_
D:
1e
d2clpe_
E:
1f
d2clpf_
F:
1g
d2clpg_
G:
1h
d2clph_
H:
1i
d2clpi_
I:
1j
d2clpj_
J:
1k
d2clpk_
K:
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CATH Domains
(1, 11)
Info
all CATH domains
1a: CATH_2clpI00 (I:39-360)
1b: CATH_2clpA00 (A:38-360)
1c: CATH_2clpB00 (B:38-360)
1d: CATH_2clpC00 (C:38-360)
1e: CATH_2clpD00 (D:38-360)
1f: CATH_2clpE00 (E:38-360)
1g: CATH_2clpF00 (F:38-360)
1h: CATH_2clpG00 (G:38-360)
1i: CATH_2clpH00 (H:38-360)
1j: CATH_2clpJ00 (J:38-360)
1k: CATH_2clpK00 (K:38-360)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Human (Homo sapiens)
(116)
1a
2clpI00
I:39-360
1b
2clpA00
A:38-360
1c
2clpB00
B:38-360
1d
2clpC00
C:38-360
1e
2clpD00
D:38-360
1f
2clpE00
E:38-360
1g
2clpF00
F:38-360
1h
2clpG00
G:38-360
1i
2clpH00
H:38-360
1j
2clpJ00
J:38-360
1k
2clpK00
K:38-360
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (555 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Biol.Unit 2 (106 KB)
Header - Biol.Unit 2
Biol.Unit 3 (106 KB)
Header - Biol.Unit 3
Biol.Unit 4 (106 KB)
Header - Biol.Unit 4
Biol.Unit 5 (105 KB)
Header - Biol.Unit 5
Biol.Unit 6 (107 KB)
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