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2CLP
Asym. Unit
Info
Asym.Unit (555 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (106 KB)
Biol.Unit 3 (106 KB)
Biol.Unit 4 (106 KB)
Biol.Unit 5 (105 KB)
Biol.Unit 6 (107 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN AFLATOXIN B1 ALDEHYDE REDUCTASE MEMBER 3
Authors
:
J. E. Debreczeni, B. D. Marsden, C. Johansson, K. Kavanagh, K. Guo, C. Sm O. Gileadi, A. Turnbull, E. Papagrigoriou, F. Von Delft, A. Edwards, C. Arrowsmith, J. Weigelt, M. Sundstrom, U. Oppermann
Date
:
28 Apr 06 (Deposition) - 12 May 06 (Release) - 04 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K (2x)
Keywords
:
Oxidoreductase, Aldo-Keto Reductase Family 7, Nad, Nadp, Tim Barrel, Ssa Reductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. E. Debreczeni, C. Johansson, K. Kavanagh, A. Turnbull, E. Papagrigoriou, F. Von Delft, A. Edwards, C. Arrowsmith, J. Weigelt, M. Sundstrom, U. Oppermann
Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase Member 3
To Be Published
[
close entry info
]
Hetero Components
(2, 15)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
2b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
2c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
2d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
2e: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPe)
2f: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPf)
2g: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPg)
2h: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPh)
2i: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPi)
2j: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPj)
2k: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
NDP
11
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:269 , GLU A:272
BINDING SITE FOR RESIDUE CA A1362
02
AC2
SOFTWARE
HIS C:269 , GLU C:272
BINDING SITE FOR RESIDUE CA C1362
03
AC3
SOFTWARE
HIS E:269 , GLU E:272
BINDING SITE FOR RESIDUE CA E1362
04
AC4
SOFTWARE
HIS G:269 , GLU G:272
BINDING SITE FOR RESIDUE CA G1362
05
AC5
SOFTWARE
GLY A:44 , ALA A:45 , MET A:46 , ARG A:51 , ASP A:73 , TYR A:78 , HIS A:142 , SER A:172 , ASN A:173 , GLN A:198 , PHE A:226 , ASN A:227 , PRO A:228 , LEU A:229 , ALA A:230 , GLY A:231 , GLY A:232 , THR A:235 , LYS A:237 , TYR A:238 , ARG A:251 , ILE A:315 , GLY A:317 , MET A:318 , SER A:319 , GLN A:323 , GLN A:326 , ASN A:327
BINDING SITE FOR RESIDUE NDP A1361
06
AC6
SOFTWARE
GLY B:44 , MET B:46 , ARG B:51 , ASP B:73 , TYR B:78 , SER B:172 , ASN B:173 , GLN B:198 , PHE B:226 , ASN B:227 , PRO B:228 , LEU B:229 , ALA B:230 , GLY B:231 , GLY B:232 , THR B:235 , LYS B:237 , TYR B:238 , GLY B:250 , ARG B:251 , ILE B:315 , GLY B:317 , MET B:318 , SER B:319 , GLN B:323 , GLN B:326 , ASN B:327
BINDING SITE FOR RESIDUE NDP B1361
07
AC7
SOFTWARE
GLY C:44 , ALA C:45 , MET C:46 , ARG C:51 , ASP C:73 , TYR C:78 , HIS C:142 , SER C:172 , ASN C:173 , GLN C:198 , PHE C:226 , ASN C:227 , PRO C:228 , LEU C:229 , ALA C:230 , GLY C:231 , GLY C:232 , THR C:235 , LYS C:237 , TYR C:238 , GLY C:250 , ARG C:251 , ILE C:315 , GLY C:317 , MET C:318 , SER C:319 , GLN C:323 , GLN C:326 , ASN C:327
BINDING SITE FOR RESIDUE NDP C1361
08
AC8
SOFTWARE
GLY D:44 , ALA D:45 , MET D:46 , ARG D:51 , ASP D:73 , TYR D:78 , LYS D:106 , HIS D:142 , SER D:172 , ASN D:173 , GLN D:198 , PHE D:226 , ASN D:227 , PRO D:228 , LEU D:229 , ALA D:230 , GLY D:231 , GLY D:232 , THR D:235 , LYS D:237 , TYR D:238 , GLY D:250 , ARG D:251 , ILE D:315 , GLY D:317 , MET D:318 , SER D:319 , GLN D:323 , GLN D:326 , ASN D:327
BINDING SITE FOR RESIDUE NDP D1361
09
AC9
SOFTWARE
GLY E:44 , MET E:46 , ARG E:51 , ASP E:73 , TYR E:78 , LYS E:106 , HIS E:142 , SER E:172 , ASN E:173 , GLN E:198 , PHE E:226 , ASN E:227 , PRO E:228 , LEU E:229 , ALA E:230 , GLY E:231 , GLY E:232 , THR E:235 , LYS E:237 , TYR E:238 , ARG E:251 , ILE E:315 , GLY E:317 , SER E:319 , GLN E:323 , GLN E:326 , ASN E:327
BINDING SITE FOR RESIDUE NDP E1361
10
BC1
SOFTWARE
GLY F:44 , MET F:46 , ARG F:51 , ASP F:73 , TYR F:78 , HIS F:142 , SER F:172 , ASN F:173 , GLN F:198 , PHE F:226 , ASN F:227 , PRO F:228 , LEU F:229 , ALA F:230 , GLY F:231 , GLY F:232 , THR F:235 , LYS F:237 , TYR F:238 , GLY F:250 , ARG F:251 , ILE F:315 , GLY F:317 , MET F:318 , SER F:319 , GLN F:323 , GLN F:326 , ASN F:327
BINDING SITE FOR RESIDUE NDP F1361
11
BC2
SOFTWARE
GLY G:44 , MET G:46 , ARG G:51 , ASP G:73 , TYR G:78 , LYS G:106 , HIS G:142 , SER G:172 , ASN G:173 , GLN G:198 , PHE G:226 , ASN G:227 , PRO G:228 , LEU G:229 , ALA G:230 , GLY G:231 , GLY G:232 , THR G:235 , LYS G:237 , TYR G:238 , GLY G:250 , ARG G:251 , ILE G:315 , GLY G:317 , SER G:319 , GLN G:323 , GLN G:326 , ASN G:327
BINDING SITE FOR RESIDUE NDP G1361
12
BC3
SOFTWARE
GLY H:44 , MET H:46 , ARG H:51 , ASP H:73 , TYR H:78 , HIS H:142 , SER H:172 , GLN H:198 , PHE H:226 , ASN H:227 , PRO H:228 , LEU H:229 , ALA H:230 , GLY H:231 , GLY H:232 , THR H:235 , LYS H:237 , TYR H:238 , GLY H:250 , ARG H:251 , TYR H:261 , THR H:293 , ILE H:315 , GLY H:317 , MET H:318 , SER H:319 , GLN H:323 , GLN H:326 , ASN H:327
BINDING SITE FOR RESIDUE NDP H1361
13
BC4
SOFTWARE
GLY I:44 , ALA I:45 , MET I:46 , ASP I:73 , TYR I:78 , HIS I:142 , SER I:172 , ASN I:173 , GLN I:198 , PHE I:226 , ASN I:227 , PRO I:228 , LEU I:229 , GLY I:231 , GLY I:232 , THR I:235 , LYS I:237 , TYR I:238 , GLY I:250 , ARG I:251 , THR I:293 , ILE I:315 , GLY I:317 , MET I:318 , SER I:319 , GLN I:323 , GLN I:326 , ASN I:327
BINDING SITE FOR RESIDUE NDP I1361
14
BC5
SOFTWARE
GLY J:44 , ALA J:45 , MET J:46 , ASP J:73 , TYR J:78 , HIS J:142 , SER J:172 , ASN J:173 , GLN J:198 , PHE J:226 , ASN J:227 , PRO J:228 , LEU J:229 , ALA J:230 , GLY J:231 , GLY J:232 , THR J:235 , LYS J:237 , TYR J:238 , GLY J:250 , ARG J:251 , TYR J:261 , THR J:293 , ILE J:315 , GLY J:317 , MET J:318 , SER J:319 , GLN J:323 , GLN J:326 , ASN J:327
BINDING SITE FOR RESIDUE NDP J1361
15
BC6
SOFTWARE
GLY K:44 , ALA K:45 , MET K:46 , ASP K:73 , TYR K:78 , HIS K:142 , SER K:172 , ASN K:173 , GLN K:198 , PHE K:226 , ASN K:227 , PRO K:228 , LEU K:229 , ALA K:230 , GLY K:231 , GLY K:232 , THR K:235 , LYS K:237 , TYR K:238 , GLY K:250 , ARG K:251 , THR K:293 , ILE K:315 , GLY K:317 , MET K:318 , SER K:319 , GLN K:323 , GLN K:326 , ASN K:327
BINDING SITE FOR RESIDUE NDP K1361
[
close Site info
]
SAPs(SNPs)/Variants
(3, 33)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_017416 (V167M, chain A/B/C/D/E/F/G/H/I/J/K, )
2: VAR_017417 (D244D, chain A/B/C/D/E/F/G/H/I/J/K, )
3: VAR_017418 (A352A, chain A/B/C/D/E/F/G/H/I/J/K, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_017416
V
138
M
ARK73_HUMAN
Polymorphism
2231198
A/B/C/D/E/F/G/H/I/J/K
V
167
M
2
UniProt
VAR_017417
N
215
D
ARK73_HUMAN
Polymorphism
1738023
A/B/C/D/E/F/G/H/I/J/K
D
244
D
3
UniProt
VAR_017418
T
323
A
ARK73_HUMAN
Polymorphism
1738025
A/B/C/D/E/F/G/H/I/J/K
A
352
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(7, 77)
Info
All Exons
Exon 1.1 (A:38-101 | B:38-101 | C:38-101 | D...)
Exon 1.2 (A:101-163 | B:101-163 | C:101-163 ...)
Exon 1.3 (A:164-198 | B:164-198 | C:164-198 ...)
Exon 1.4 (A:199-231 | B:199-231 | C:199-231 ...)
Exon 1.5 (A:231-264 | B:231-264 | C:231-264 ...)
Exon 1.6 (A:264-307 | B:264-307 | C:264-307 ...)
Exon 1.7 (A:308-360 | B:308-360 | C:308-360 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000361640
1
ENSE00001845823
chr1:
19615744-19614990
755
ARK73_HUMAN
1-72
72
11
A:38-101
B:38-101
C:38-101
D:38-101
E:38-101
F:38-101
G:38-101
H:38-101
I:39-101
J:38-101
K:38-101
64
64
64
64
64
64
64
64
63
64
64
1.2
ENST00000361640
2
ENSE00001664415
chr1:
19612866-19612679
188
ARK73_HUMAN
72-134
63
11
A:101-163
B:101-163
C:101-163
D:101-163
E:101-163
F:101-163
G:101-163
H:101-163
I:101-163
J:101-163
K:101-163
63
63
63
63
63
63
63
63
63
63
63
1.3
ENST00000361640
3
ENSE00001784129
chr1:
19612486-19612382
105
ARK73_HUMAN
135-169
35
11
A:164-198
B:164-198
C:164-198
D:164-198
E:164-198
F:164-198
G:164-198
H:164-198
I:164-198
J:164-198
K:164-198
35
35
35
35
35
35
35
35
35
35
35
1.4
ENST00000361640
4
ENSE00001750802
chr1:
19611608-19611512
97
ARK73_HUMAN
170-202
33
11
A:199-231
B:199-231
C:199-231
D:199-231
E:199-231
F:199-231
G:199-231
H:199-231
I:199-231
J:199-231
K:199-231
33
33
33
33
33
33
33
33
33
33
33
1.5
ENST00000361640
5
ENSE00001677350
chr1:
19611279-19611180
100
ARK73_HUMAN
202-235
34
11
A:231-264
B:231-264
C:231-264
D:231-264
E:231-264
F:231-264
G:231-264
H:231-264
I:231-264
J:231-264
K:231-264
34
34
34
34
34
34
34
34
34
34
34
1.6
ENST00000361640
6
ENSE00001675448
chr1:
19610619-19610490
130
ARK73_HUMAN
235-278
44
11
A:264-307
B:264-307
C:264-307
D:264-307
E:264-307
F:264-307
G:264-307
H:264-307
I:264-307
J:264-307
K:264-307
44
44
44
44
44
44
44
44
44
44
44
1.7
ENST00000361640
7
ENSE00001465982
chr1:
19609386-19609052
335
ARK73_HUMAN
279-331
53
11
A:308-360
B:308-360
C:308-360
D:308-360
E:308-360
F:308-360
G:308-360
H:308-360
I:308-360
J:308-360
K:308-360
53
53
53
53
53
53
53
53
53
53
53
[
close EXON info
]
SCOP Domains
(1, 11)
Info
All SCOP Domains
1a: SCOP_d2clpa_ (A:)
1b: SCOP_d2clpb_ (B:)
1c: SCOP_d2clpc_ (C:)
1d: SCOP_d2clpd_ (D:)
1e: SCOP_d2clpe_ (E:)
1f: SCOP_d2clpf_ (F:)
1g: SCOP_d2clpg_ (G:)
1h: SCOP_d2clph_ (H:)
1i: SCOP_d2clpi_ (I:)
1j: SCOP_d2clpj_ (J:)
1k: SCOP_d2clpk_ (K:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
automated matches
(62)
Human (Homo sapiens) [TaxId: 9606]
(48)
1a
d2clpa_
A:
1b
d2clpb_
B:
1c
d2clpc_
C:
1d
d2clpd_
D:
1e
d2clpe_
E:
1f
d2clpf_
F:
1g
d2clpg_
G:
1h
d2clph_
H:
1i
d2clpi_
I:
1j
d2clpj_
J:
1k
d2clpk_
K:
[
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CATH Domains
(1, 11)
Info
all CATH domains
1a: CATH_2clpI00 (I:39-360)
1b: CATH_2clpA00 (A:38-360)
1c: CATH_2clpB00 (B:38-360)
1d: CATH_2clpC00 (C:38-360)
1e: CATH_2clpD00 (D:38-360)
1f: CATH_2clpE00 (E:38-360)
1g: CATH_2clpF00 (F:38-360)
1h: CATH_2clpG00 (G:38-360)
1i: CATH_2clpH00 (H:38-360)
1j: CATH_2clpJ00 (J:38-360)
1k: CATH_2clpK00 (K:38-360)
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Topologies
(
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Human (Homo sapiens)
(116)
1a
2clpI00
I:39-360
1b
2clpA00
A:38-360
1c
2clpB00
B:38-360
1d
2clpC00
C:38-360
1e
2clpD00
D:38-360
1f
2clpE00
E:38-360
1g
2clpF00
F:38-360
1h
2clpG00
G:38-360
1i
2clpH00
H:38-360
1j
2clpJ00
J:38-360
1k
2clpK00
K:38-360
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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