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2CJZ
Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C472S MUTANT OF HUMAN PROTEIN TYROSINE PHOSPHATASE PTPN5 (STEP, STRIATUM ENRICHED PHOSPHATASE) IN COMPLEX WITH PHOSPHOTYROSINE
Authors
:
J. E. Debreczeni, A. J. Barr, J. Eswaran, C. Smee, N. Burgess, O. Gileadi P. Savitsky, M. Sundstrom, C. Arrowsmith, A. Edwards, J. Weigelt, S. K F. Von Delft
Date
:
10 Apr 06 (Deposition) - 16 May 06 (Release) - 20 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein Phosphatase, Step, Ptpn5, Hydrolase, Phosphatase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Barr, E. Ugochukwu, W. H. Lee, O. N. F. King, P. Filippakopoulos, I. Alfano, P. Savitsky, N. A. Burgess-Brown, S. Muller, S. Knapp
Large-Scale Structural Analysis Of The Classical Human Protein Tyrosine Phosphatome.
Cell(Cambridge, Mass. ) V. 136 352 2009
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: O-PHOSPHOTYROSINE (PTRa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
PTR
1
Ligand/Ion
O-PHOSPHOTYROSINE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:304 , ILE A:307 , SER A:472 , SER A:473 , ALA A:474 , GLY A:475 , ILE A:476 , GLY A:477 , ARG A:478 , HOH A:2213
BINDING SITE FOR RESIDUE PTR A1537
2
AC2
SOFTWARE
PHE A:280 , PHE A:281 , ILE A:283 , MET A:285 , ARG A:508 , HOH A:2194
BINDING SITE FOR RESIDUE EDO A1538
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_PTP (A:276-531)
2: TYR_PHOSPHATASE_2 (A:445-522)
3: TYR_PHOSPHATASE_1 (A:470-480)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_PTP
PS50055
PTP type protein phosphatase family profile.
PTN5_HUMAN
300-555
1
A:276-531
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
PTN5_HUMAN
469-546
1
A:445-522
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
PTN5_HUMAN
494-504
1
A:470-480
[
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Exons
(8, 8)
Info
All Exons
Exon 1.8b (A:-7-281)
Exon 1.9 (A:282-310)
Exon 1.10 (A:310-336)
Exon 1.11 (A:337-375)
Exon 1.12 (A:385-419)
Exon 1.13b (A:420-473 (gaps))
Exon 1.14 (A:473-511)
Exon 1.15c (A:511-536)
View:
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All Exon Boundaries
1: Boundary 1.7/1.8b
2: Boundary 1.8b/1.9
3: Boundary 1.9/1.10
4: Boundary 1.10/1.11
5: Boundary 1.11/1.12
6: Boundary 1.12/1.13b
7: Boundary 1.13b/1.14
8: Boundary 1.14/1.15c
9: Boundary 1.15c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000358540
1b
ENSE00001333579
chr11:
18813389-18813072
318
PTN5_HUMAN
-
0
0
-
-
1.2a
ENST00000358540
2a
ENSE00001399458
chr11:
18793618-18793486
133
PTN5_HUMAN
1-7
7
0
-
-
1.3
ENST00000358540
3
ENSE00001702786
chr11:
18787430-18787354
77
PTN5_HUMAN
7-33
27
0
-
-
1.4b
ENST00000358540
4b
ENSE00001129124
chr11:
18765746-18765553
194
PTN5_HUMAN
33-97
65
0
-
-
1.5b
ENST00000358540
5b
ENSE00000706715
chr11:
18764976-18764869
108
PTN5_HUMAN
98-133
36
0
-
-
1.6
ENST00000358540
6
ENSE00000706722
chr11:
18764622-18764539
84
PTN5_HUMAN
134-161
28
0
-
-
1.7
ENST00000358540
7
ENSE00000706726
chr11:
18764050-18763809
242
PTN5_HUMAN
162-242
81
0
-
-
1.8b
ENST00000358540
8b
ENSE00000706728
chr11:
18762339-18762150
190
PTN5_HUMAN
242-305
64
1
A:-7-281
31
1.9
ENST00000358540
9
ENSE00000706730
chr11:
18759511-18759427
85
PTN5_HUMAN
306-334
29
1
A:282-310
29
1.10
ENST00000358540
10
ENSE00000706732
chr11:
18755182-18755103
80
PTN5_HUMAN
334-360
27
1
A:310-336
27
1.11
ENST00000358540
11
ENSE00000706737
chr11:
18754919-18754782
138
PTN5_HUMAN
361-406
46
1
A:337-375
39
1.12
ENST00000358540
12
ENSE00001150710
chr11:
18754249-18754139
111
PTN5_HUMAN
407-443
37
1
A:385-419
35
1.13b
ENST00000358540
13b
ENSE00001150704
chr11:
18751365-18751205
161
PTN5_HUMAN
444-497
54
1
A:420-473 (gaps)
54
1.14
ENST00000358540
14
ENSE00001150696
chr11:
18751113-18751000
114
PTN5_HUMAN
497-535
39
1
A:473-511
39
1.15c
ENST00000358540
15c
ENSE00001819428
chr11:
18750574-18749475
1100
PTN5_HUMAN
535-565
31
1
A:511-536
26
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2cjza_ (A:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
automated matches
(83)
Protein domain
:
automated matches
(83)
Human (Homo sapiens) [TaxId: 9606]
(76)
1a
d2cjza_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2cjzA00 (A:-7-536)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
2cjzA00
A:-7-536
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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