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2CJT
Asym. Unit
Info
Asym.Unit (107 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR A MUNC13-1 DIMERIC - MUNC13-1 - RIM HETERODIMER SWITCH: C2-DOMAINS AS VERSATILE PROTEIN-PROTEIN INTERACTION MODULES
Authors
:
J. Lu, M. Machius, I. Dulubova, H. Dai, T. C. Sudhof, D. R. Tomchick, J. Ri
Date
:
06 Apr 06 (Deposition) - 07 Jun 06 (Release) - 28 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.44
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Phorbol-Ester Binding, Neurotransmitter Release, Rim, Munc13, C2 Domains, Exocytosis, Metal-Binding, Protein-Protein Interactions, Zinc Finger, Synaptosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Lu, M. Machius, I. Dulubova, H. Dai, T. C. Sudhof, D. R. Tomchick, J. Rizo
Structural Basis For A Munc13-1 Dimeric To Munc13-1/Rim Heterodimer Switch
Plos Biol. V. 4 E192 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 34)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
2f: FORMIC ACID (FMTf)
2g: FORMIC ACID (FMTg)
2h: FORMIC ACID (FMTh)
2i: FORMIC ACID (FMTi)
2j: FORMIC ACID (FMTj)
2k: FORMIC ACID (FMTk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
23
Ligand/Ion
1,2-ETHANEDIOL
2
FMT
11
Ligand/Ion
FORMIC ACID
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:17 , GLY A:40 , SER A:41 , GLN A:42 , HOH A:2084 , HOH A:2182
BINDING SITE FOR RESIDUE EDO A1129
02
AC2
SOFTWARE
CYS A:5 , GLY A:7 , LYS A:9 , ASP A:48 , GLU A:91 , ASP A:124 , HIS A:126
BINDING SITE FOR RESIDUE EDO A1130
03
AC3
SOFTWARE
VAL A:0 , MET A:1 , SER A:2 , ILE A:53 , ASN A:54 , LEU A:56 , ILE A:70 , HOH A:2183 , HOH A:2184
BINDING SITE FOR RESIDUE EDO A1131
04
AC4
SOFTWARE
ARG A:86 , GLY A:92 , PRO A:93 , GLY A:94 , GLU A:95 , ASP A:124 , ALA A:125 , EDO A:1133
BINDING SITE FOR RESIDUE EDO A1132
05
AC5
SOFTWARE
GLU A:95 , LEU A:123 , ALA A:125 , EDO A:1132 , HOH A:2178
BINDING SITE FOR RESIDUE EDO A1133
06
AC6
SOFTWARE
GLY A:68 , LEU A:69 , ILE A:70 , ASP A:72 , HOH A:2130 , HOH A:2133 , SER C:33 , THR C:34
BINDING SITE FOR RESIDUE EDO A1134
07
AC7
SOFTWARE
ASP A:48 , MET A:50 , FMT A:1139 , HOH A:2187 , HOH A:2188 , HOH A:2189 , TRP B:96 , HOH B:2154
BINDING SITE FOR RESIDUE EDO A1135
08
AC8
SOFTWARE
ASN A:89 , GLU A:128 , HOH A:2181 , HOH A:2190 , THR B:98 , PHE B:118 , ARG B:120
BINDING SITE FOR RESIDUE EDO A1136
09
AC9
SOFTWARE
LYS B:27 , LYS B:32 , GLU B:63 , TRP B:65 , LYS D:27 , LYS D:32 , GLU D:63
BINDING SITE FOR RESIDUE EDO B1129
10
BC1
SOFTWARE
GLY B:68 , ILE B:70 , TRP B:71 , ASP B:72 , HOH B:2119 , HOH B:2127 , HOH B:2189 , SER D:33 , THR D:34
BINDING SITE FOR RESIDUE EDO B1130
11
BC2
SOFTWARE
THR A:98 , PHE A:118 , ARG A:120 , ASN B:89 , GLU B:128 , HOH B:2187
BINDING SITE FOR RESIDUE EDO B1131
12
BC3
SOFTWARE
ARG B:86 , GLY B:92 , PRO B:93 , GLY B:94 , ASP B:124 , ALA B:125 , EDO B:1133 , FMT B:1136
BINDING SITE FOR RESIDUE EDO B1132
13
BC4
SOFTWARE
ILE B:80 , GLU B:95 , LEU B:123 , ALA B:125 , EDO B:1132 , FMT B:1136 , HOH B:2191
BINDING SITE FOR RESIDUE EDO B1133
14
BC5
SOFTWARE
VAL B:0 , SER B:2 , ILE B:53 , ASN B:54 , EDO D:1131 , HOH D:2129 , HOH D:2130
BINDING SITE FOR RESIDUE EDO B1134
15
BC6
SOFTWARE
FMT A:3144 , CYS B:5 , GLY B:7 , LYS B:9 , ASP B:48 , GLU B:91 , ASP B:124 , HIS B:126
BINDING SITE FOR RESIDUE EDO B1135
16
BC7
SOFTWARE
LYS A:27 , LYS A:32 , GLU A:63 , TRP A:65 , LYS C:27 , LYS C:32 , GLU C:63
BINDING SITE FOR RESIDUE EDO C1129
17
BC8
SOFTWARE
TRP B:71 , ARG B:83 , PHE D:51 , GLU D:52 , HOH D:2126
BINDING SITE FOR RESIDUE EDO D1129
18
BC9
SOFTWARE
GLU D:95 , LEU D:123 , ASP D:124 , ALA D:125 , FMT D:1134 , HOH D:2127 , HOH D:2128
BINDING SITE FOR RESIDUE EDO D1130
19
CC1
SOFTWARE
LEU B:56 , ILE B:70 , ARG B:83 , EDO B:1134 , SER D:33 , PHE D:49 , MET D:50 , PHE D:51 , HOH D:2129 , HOH D:2130
BINDING SITE FOR RESIDUE EDO D1131
20
CC2
SOFTWARE
GLY B:-2 , GLY B:-1 , GLN D:47 , HOH D:2131
BINDING SITE FOR RESIDUE EDO D1132
21
CC3
SOFTWARE
GLY D:7 , LYS D:9 , GLU D:46 , GLN D:47 , ASP D:48
BINDING SITE FOR RESIDUE EDO D1133
22
CC4
SOFTWARE
GLN B:17 , GLY B:40 , SER B:41 , GLN B:42 , HOH C:3001 , HOH C:3002
BINDING SITE FOR RESIDUE EDO C3123
23
CC5
SOFTWARE
TRP A:96 , HOH A:2159 , HOH A:2160 , HOH A:3003 , HOH A:3004 , ASP B:48 , MET B:50
BINDING SITE FOR RESIDUE EDO A3135
24
CC6
SOFTWARE
GLY A:68 , LEU A:69 , GLN A:87 , HOH A:2191
BINDING SITE FOR RESIDUE FMT A1137
25
CC7
SOFTWARE
ASN A:66 , THR A:73 , MET A:74
BINDING SITE FOR RESIDUE FMT A1138
26
CC8
SOFTWARE
GLN A:47 , ASP A:48 , EDO A:1135 , HOH A:2192 , HOH A:2193 , HOH B:2154 , HOH C:2078
BINDING SITE FOR RESIDUE FMT A1139
27
CC9
SOFTWARE
THR A:113 , LYS A:114 , HOH A:2194 , ARG B:39
BINDING SITE FOR RESIDUE FMT A1140
28
DC1
SOFTWARE
ILE B:85 , ARG B:86 , ALA B:125 , EDO B:1132 , EDO B:1133 , HOH B:2191
BINDING SITE FOR RESIDUE FMT B1136
29
DC2
SOFTWARE
LYS C:67 , GLY C:68 , LEU C:69 , ILE C:70 , ASP C:72 , HOH C:2118 , HOH C:2119
BINDING SITE FOR RESIDUE FMT C1130
30
DC3
SOFTWARE
GLY A:-2 , GLU C:46 , ASP C:48 , GLU C:91
BINDING SITE FOR RESIDUE FMT C1131
31
DC4
SOFTWARE
ARG D:86 , GLY D:92 , PRO D:93 , GLY D:94 , GLU D:95 , ASP D:124 , EDO D:1130
BINDING SITE FOR RESIDUE FMT D1134
32
DC5
SOFTWARE
THR D:117
BINDING SITE FOR RESIDUE FMT D1135
33
DC6
SOFTWARE
LYS D:67 , GLY D:68 , LEU D:69 , ILE D:70 , TRP D:71 , ASP D:72 , HOH D:2085
BINDING SITE FOR RESIDUE FMT D1136
34
DC7
SOFTWARE
GLY B:7 , LYS B:9 , GLU B:46 , ASP B:48 , GLU B:91 , EDO B:1135
BINDING SITE FOR RESIDUE FMT A3144
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2cjtb_ (B:)
1b: SCOP_d2cjtc_ (C:)
1c: SCOP_d2cjtd_ (D:)
2a: SCOP_d2cjta1 (A:1-128)
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Classes
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
PLC-like (P variant)
(81)
Protein domain
:
automated matches
(3)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
1a
d2cjtb_
B:
1b
d2cjtc_
C:
1c
d2cjtd_
D:
Protein domain
:
Unc-13 homolog A
(2)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
2a
d2cjta1
A:1-128
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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