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2CIK
Asym. Unit
Info
Asym.Unit (81 KB)
Biol.Unit 1 (72 KB)
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(1)
Title
:
INSIGHTS INTO CROSSREACTIVITY IN HUMAN ALLORECOGNITION: THE STRUCTURE OF HLA-B35011 PRESENTING AN EPITOPE DERIVED FROM CYTOCHROME P450.
Authors
:
C. S. Hourigan, M. Harkiolaki, N. A. Peterson, J. I. Bell, E. Y. Jones, C. A. O'Callaghan
Date
:
22 Mar 06 (Deposition) - 25 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Immune System/Peptide, Antigen/Peptide Complex, Major Histocompatibility Antigen, Human, Mhc, Hla, Hla-B3501, Ebv, Allo-Ligand, Glycoprotein, Immune Response, Membrane, Mhc I, Polymorphism, Transmembrane, Immunoglobulin Domain, Pyrrolidone Carboxylic Acid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. S. Hourigan, M. Harkiolaki, N. A. Peterson, J. I. Bell, E. Y. Jones, C. A. O'Callaghan
The Structure Of The Human Allo-Ligand Hla-B*3501 In Complex With A Cytochrome P450 Peptide: Steric Hindrance Influences Tcr Allo-Recognition.
Eur. J. Immunol. V. 36 3288 2006
[
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:6 , PHE A:8 , ASP A:29 , ASP A:30 , HOH A:2245 , HOH A:2246 , HOH A:2247 , TYR B:63
BINDING SITE FOR RESIDUE GOL A1277
2
AC2
SOFTWARE
SER B:33 , ASP B:34
BINDING SITE FOR RESIDUE GOL B1100
3
AC3
SOFTWARE
LEU A:206 , ARG A:234 , GLN A:242 , TYR B:10 , SER B:11 , HIS B:13 , PRO B:14 , ARG B:97 , HOH B:2014 , HOH B:2066
BINDING SITE FOR RESIDUE GOL B1101
[
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SAPs(SNPs)/Variants
(14, 14)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_016393 (G16V, chain A, )
02: VAR_016394 (A24S, chain A, )
03: VAR_016395 (T45E, chain A, )
04: VAR_016396 (N63E, chain A, )
05: VAR_016397 (F67S, chain A, )
06: VAR_016398 (Y74D, chain A, )
07: VAR_016399 (G83D, chain A, )
08: VAR_016401 (R97S, chain A, )
09: VAR_016402 (L103V, chain A, )
10: VAR_016403 (L109F, chain A, )
11: VAR_016404 (D114N, chain A, )
12: VAR_016405 (S116F, chain A, )
13: VAR_016406 (S116Y, chain A, )
14: VAR_016407 (L156R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_016393
G
40
V
1B35_HUMAN
Polymorphism
---
A
G
16
V
02
UniProt
VAR_016394
A
48
S
1B35_HUMAN
Polymorphism
---
A
A
24
S
03
UniProt
VAR_016395
T
69
E
1B35_HUMAN
Polymorphism
---
A
T
45
E
04
UniProt
VAR_016396
N
87
E
1B35_HUMAN
Polymorphism
---
A
N
63
E
05
UniProt
VAR_016397
F
91
S
1B35_HUMAN
Polymorphism
---
A
F
67
S
06
UniProt
VAR_016398
Y
98
D
1B35_HUMAN
Polymorphism
---
A
Y
74
D
07
UniProt
VAR_016399
G
107
D
1B35_HUMAN
Polymorphism
---
A
G
83
D
08
UniProt
VAR_016401
R
121
S
1B35_HUMAN
Polymorphism
---
A
R
97
S
09
UniProt
VAR_016402
L
127
V
1B35_HUMAN
Polymorphism
---
A
L
103
V
10
UniProt
VAR_016403
L
133
F
1B35_HUMAN
Polymorphism
---
A
L
109
F
11
UniProt
VAR_016404
D
138
N
1B35_HUMAN
Polymorphism
---
A
D
114
N
12
UniProt
VAR_016405
S
140
F
1B35_HUMAN
Polymorphism
---
A
S
116
F
13
UniProt
VAR_016406
S
140
Y
1B35_HUMAN
Polymorphism
---
A
S
116
Y
14
UniProt
VAR_016407
L
180
R
1B35_HUMAN
Polymorphism
---
A
L
156
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,A:257-263)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
B:78-84
1B35_HUMAN
281-287
1
A:257-263
[
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Exons
(1, 1)
Info
All Exons
Exon 1.3 (C:1-9)
View:
Select:
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All Exon Boundaries
1: Boundary 1.2b/1.3
2: Boundary 1.3/1.4b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000285979
2b
ENSE00001895878
chr10:
96443378-96443744
367
CP2CI_HUMAN
1-56
56
0
-
-
1.3
ENST00000285979
3
ENSE00001634319
chr10:
96447527-96447689
163
CP2CI_HUMAN
57-111
55
1
C:1-9
9
1.4b
ENST00000285979
4b
ENSE00001685819
chr10:
96447882-96448031
150
CP2CI_HUMAN
111-161
51
0
-
-
1.5
ENST00000285979
5
ENSE00001783673
chr10:
96454674-96454834
161
CP2CI_HUMAN
161-214
54
0
-
-
1.6
ENST00000285979
6
ENSE00001021637
chr10:
96466541-96466717
177
CP2CI_HUMAN
215-273
59
0
-
-
1.7
ENST00000285979
7
ENSE00001803777
chr10:
96480153-96480294
142
CP2CI_HUMAN
274-321
48
0
-
-
1.8
ENST00000285979
8
ENSE00001791791
chr10:
96484103-96484290
188
CP2CI_HUMAN
321-383
63
0
-
-
1.9a
ENST00000285979
9a
ENSE00001611445
chr10:
96493054-96493195
142
CP2CI_HUMAN
384-431
48
0
-
-
1.10c
ENST00000285979
10c
ENSE00001893364
chr10:
96495020-96495947
928
CP2CI_HUMAN
431-490
60
0
-
-
[
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]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2cikb_ (B:)
2a: SCOP_d2cika1 (A:182-276)
3a: SCOP_d2cika2 (A:1-181)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d2cikb_
B:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
2a
d2cika1
A:182-276
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-B53 [TaxId: 9606]
(23)
3a
d2cika2
A:1-181
[
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2cikA01 (A:1-181)
2a: CATH_2cikB00 (B:1-99)
2b: CATH_2cikA02 (A:182-272)
View:
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Classes
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
2cikA01
A:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
2cikB00
B:1-99
2b
2cikA02
A:182-272
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Chain C
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