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2CIJ
Biol. Unit 1
Info
Asym.Unit (125 KB)
Biol.Unit 1 (231 KB)
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(1)
Title
:
MEMBRANE-BOUND GLUTAMATE CARBOXYPEPTIDASE II (GCPII) WITH BOUND METHIONINE
Authors
:
C. Barinka, A. Plechanovova, L. Rulisek, P. Mlcochova, P. Majer, B. S. S R. Hilgenfeld, J. R. Mesters, J. Konvalinka
Date
:
21 Mar 06 (Deposition) - 27 Mar 07 (Release) - 11 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Neurodegenerative Disease, Peptidase, Prostate Cancer, Psma, Glycoprotein, Hydrolase, Antigen, Metal-Binding, Metalloprotease, Multifunctional Enzyme, Signal-Anchor, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Mesters, R. Hilgenfeld
Glutamate Carboxypeptidase Ii
Handbook Of Metalloproteins V. 4 681 2011
(for further references see the
PDB file header
)
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Hetero Components
(4, 28)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
4a: ALPHA-D-MANNOSE (MANa)
5a: METHIONINE (METa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
MET
2
Mod. Amino Acid
METHIONINE
6
NAG
22
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:387 , GLU A:425 , HIS A:553 , ZN A:1752 , HOH A:2218
BINDING SITE FOR RESIDUE ZN A1751
02
AC2
SOFTWARE
HIS A:377 , ASP A:387 , GLU A:424 , GLU A:425 , ASP A:453 , ZN A:1751 , HOH A:2218
BINDING SITE FOR RESIDUE ZN A1752
03
AC3
SOFTWARE
THR A:269 , TYR A:272 , GLU A:433 , GLU A:436 , HOH A:2055
BINDING SITE FOR RESIDUE CA A1753
04
AC4
SOFTWARE
ASN A:451 , ASP A:453 , ARG A:534 , HOH A:2114
BINDING SITE FOR RESIDUE CL A1754
05
AC5
SOFTWARE
ARG A:210 , ASN A:257 , GLU A:424 , GLU A:425 , GLY A:427 , GLY A:518 , TYR A:552 , HIS A:553 , LYS A:699 , TYR A:700 , HOH A:2047 , HOH A:2097 , HOH A:2218 , HOH A:2223
BINDING SITE FOR RESIDUE MET A2000
06
AC6
SOFTWARE
ASN A:76 , GLN A:95
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1755 THROUGH NAG A1756 BOUND TO ASN A 76
07
AC7
SOFTWARE
ASN A:121 , THR A:123 , THR A:349
BINDING SITE FOR MONO-SACCHARIDE NAG A1757 BOUND TO ASN A 121
08
AC8
SOFTWARE
TYR A:127 , GLU A:137 , ILE A:138 , ASN A:140
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1758 THROUGH NAG A1759 BOUND TO ASN A 140
09
AC9
SOFTWARE
ASN A:195
BINDING SITE FOR MONO-SACCHARIDE NAG A1760 BOUND TO ASN A 195
10
BC1
SOFTWARE
TRP A:246 , ASN A:459 , PHE A:565 , TYR A:566
BINDING SITE FOR MONO-SACCHARIDE NAG A1761 BOUND TO ASN A 459
11
BC2
SOFTWARE
ASN A:476 , HOH A:2144
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1762 THROUGH NAG A1763 BOUND TO ASN A 476
12
BC3
SOFTWARE
HIS A:112 , SER A:241 , GLU A:276 , TYR A:277 , ARG A:354 , SER A:631 , SER A:634 , ALA A:635 , ASN A:638 , GLN A:740 , HOH A:2062 , HOH A:2219 , HOH A:2220 , HOH A:2221 , HOH A:2222
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1764 THROUGH MAN A1767 BOUND TO ASN A 638
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_024592 (Y75H, chain A, )
2: VAR_012736 (H475Y, chain A, )
3: VAR_028882 (V627L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024592
Y
75
H
FOLH1_HUMAN
Polymorphism
202676
A
Y
75
H
2
UniProt
VAR_012736
H
475
Y
FOLH1_HUMAN
Polymorphism
61886492
A
H
475
Y
3
UniProt
VAR_028882
V
627
L
FOLH1_HUMAN
Polymorphism
2988342
A
V
627
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2cija1 (A:594-750)
2a: SCOP_d2cija3 (A:57-117,A:351-593)
3a: SCOP_d2cija2 (A:118-350)
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Protein Domains
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(
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
N-cbl like
(37)
Superfamily
:
Transferrin receptor-like dimerisation domain
(18)
Family
:
Transferrin receptor-like dimerisation domain
(18)
Protein domain
:
Glutamate carboxypeptidase II
(14)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d2cija1
A:594-750
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
FolH catalytic domain-like
(18)
Protein domain
:
Glutamate carboxypeptidase II FOLH1
(14)
Human (Homo sapiens) [TaxId: 9606]
(14)
2a
d2cija3
A:57-117,A:351-593
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
PA domain
(18)
Family
:
PA domain
(18)
Protein domain
:
Glutamate carboxypeptidase II
(14)
Human (Homo sapiens) [TaxId: 9606]
(14)
3a
d2cija2
A:118-350
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Chain A
Asymmetric Unit 1
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