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2CHO
Biol. Unit 1
Info
Asym.Unit (244 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (122 KB)
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(1)
Title
:
BACTEROIDES THETAIOTAOMICRON HEXOSAMINIDASE WITH O-GLCNACASE ACTIVITY
Authors
:
R. J. Dennis, E. J. Taylor, M. S. Macauley, K. A. Stubbs, J. P. Turkenburg, S. J. Hart, G. N. Black, D. J. Vocadlo, G. J. Davies
Date
:
16 Mar 06 (Deposition) - 19 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
O-Glcnacase, Hydrolase, N-Acetylglucosamine
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
R. J. Dennis, E. J. Taylor, M. S. Macauley, K. A. Stubbs, J. P. Turkenburg, S. J. Hart, G. N. Black, D. J. Vocadlo, G. J. Davies
Structure And Mechanism Of A Bacterial B- Glucosaminidase Having O-Glcnacase Activity
Nat. Struct. Mol. Biol. V. 13 365 2006
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: (UNKa)
4b: (UNKb)
4c: (UNKc)
4d: (UNKd)
4e: (UNKe)
4f: (UNKf)
4g: (UNKg)
4h: (UNKh)
4i: (UNKi)
4j: (UNKj)
4k: (UNKk)
4l: (UNKl)
4m: (UNKm)
4n: (UNKn)
4o: (UNKo)
4p: (UNKp)
4q: (UNKq)
4r: (UNKr)
4s: (UNKs)
4t: (UNKt)
4u: (UNKu)
4v: (UNKv)
4w: (UNKw)
4x: (UNKx)
4y: (UNKy)
4z: (UNKz)
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No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GOL
2
Ligand/Ion
GLYCEROL
4
UNK
-1
Mod. Amino Acid
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:32 , GLU A:61 , ASP A:64 , HOH A:2035
BINDING SITE FOR RESIDUE CA A1717
2
AC2
SOFTWARE
ASP A:242 , TYR A:282 , TRP A:337 , ASN A:339 , GOL A:1719
BINDING SITE FOR RESIDUE ACT A1718
3
AC5
SOFTWARE
GLY A:135 , PHE A:136 , VAL A:314 , ASN A:339 , VAL A:342 , ASP A:344 , ASN A:372 , ACT A:1718 , HOH A:2286 , HOH A:2578
BINDING SITE FOR RESIDUE GOL A1719
4
AC6
SOFTWARE
TYR A:137 , ASP A:344 , TYR A:345 , ARG A:347 , TYR A:550 , GLN A:551 , HOH A:2579
BINDING SITE FOR RESIDUE GOL A1720
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2choa1 (A:437-590)
1b: SCOP_d2chob1 (B:437-590)
2a: SCOP_d2choa3 (A:5-126)
2b: SCOP_d2chob3 (B:5-126)
3a: SCOP_d2choa2 (A:127-436)
3b: SCOP_d2chob2 (B:127-436)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Hyaluronidase domain-like
(25)
Superfamily
:
Hyaluronidase post-catalytic domain-like
(20)
Family
:
Hyaluronidase post-catalytic domain-like
(15)
Protein domain
:
Glucosaminidase GH84 post-catalytic domain
(8)
Bacteroides thetaiotaomicron [TaxId: 818]
(8)
1a
d2choa1
A:437-590
1b
d2chob1
B:437-590
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
Hyaluronidase N-terminal domain-like
(15)
Protein domain
:
Glucosaminidase GH84, N-terminal domain
(8)
Bacteroides thetaiotaomicron [TaxId: 818]
(8)
2a
d2choa3
A:5-126
2b
d2chob3
B:5-126
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
alpha-D-glucuronidase/Hyaluronidase catalytic domain
(32)
Protein domain
:
Glucosaminidase GH84, catalytic domain
(8)
Bacteroides thetaiotaomicron [TaxId: 818]
(8)
3a
d2choa2
A:127-436
3b
d2chob2
B:127-436
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (244 KB)
Header - Asym.Unit
Biol.Unit 1 (120 KB)
Header - Biol.Unit 1
Biol.Unit 2 (122 KB)
Header - Biol.Unit 2
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